Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_M23
(888 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpa... 183 1e-46
AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily a... 175 5e-44
AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical ... 61 1e-09
AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical ... 48 9e-06
AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical ... 48 9e-06
AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical ... 48 9e-06
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 45 8e-05
Z70205-2|CAA94116.1| 529|Caenorhabditis elegans Hypothetical pr... 29 3.4
>U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpase
protein 12 protein.
Length = 491
Score = 183 bits (446), Expect = 1e-46
Identities = 85/87 (97%), Positives = 86/87 (98%)
Frame = +2
Query: 221 YAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPNDDIT 400
YAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGR+GSITQIPILTMPNDDIT
Sbjct: 283 YAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRDGSITQIPILTMPNDDIT 342
Query: 401 HPIPDLTGYITEGQIYVDRQLHNRQIY 481
HPIPDLTGYITEGQIYVDRQLHNR IY
Sbjct: 343 HPIPDLTGYITEGQIYVDRQLHNRLIY 369
Score = 115 bits (277), Expect = 4e-26
Identities = 55/58 (94%), Positives = 57/58 (98%)
Frame = +3
Query: 510 SRLMKSAIGEGMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLT 683
SRLMKSAIGEGMTR+DHSDVSNQLYACYAIGKDVQAMKAVVGEEAL+ DDLLYLEFLT
Sbjct: 379 SRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEEALSSDDLLYLEFLT 436
Score = 114 bits (275), Expect = 7e-26
Identities = 52/56 (92%), Positives = 56/56 (100%)
Frame = +1
Query: 52 DFEENGSMENVCLFLNLANDPTIERIITPRLALTAAEFLAYQCEKHVLVILTDMSS 219
DFEENGSMENVCLFLNLANDPTIERIITPR+ALT+AEFLAYQC+KHVLV+LTDMSS
Sbjct: 227 DFEENGSMENVCLFLNLANDPTIERIITPRIALTSAEFLAYQCKKHVLVVLTDMSS 282
Score = 69.3 bits (162), Expect = 3e-12
Identities = 30/34 (88%), Positives = 33/34 (97%)
Frame = +1
Query: 709 GYYENRTVFESLDIGWQLLRIFPKEMLKRIPAST 810
G+YENR+VFESLDIGWQLLRIFP+EMLKRIP ST
Sbjct: 446 GHYENRSVFESLDIGWQLLRIFPREMLKRIPEST 479
>AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily
assigned gene nameprotein 300 protein.
Length = 501
Score = 175 bits (425), Expect = 5e-44
Identities = 79/87 (90%), Positives = 84/87 (96%)
Frame = +2
Query: 221 YAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPNDDIT 400
YAEALRE+SAAREEVPGRRGFPGYMYTDLATIYERAGRV+GR GSITQIPILTMPN+DIT
Sbjct: 295 YAEALREISAAREEVPGRRGFPGYMYTDLATIYERAGRVKGREGSITQIPILTMPNNDIT 354
Query: 401 HPIPDLTGYITEGQIYVDRQLHNRQIY 481
HPIPDLTGYITEGQIY+D+QLH R IY
Sbjct: 355 HPIPDLTGYITEGQIYIDKQLHKRLIY 381
Score = 111 bits (266), Expect = 9e-25
Identities = 51/57 (89%), Positives = 56/57 (98%)
Frame = +3
Query: 510 SRLMKSAIGEGMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFL 680
SRLMKSA+GEGMTR+DHSD+SNQLYACYA+GKDVQAMKAVVG EAL+PDDLLYLEFL
Sbjct: 391 SRLMKSAVGEGMTREDHSDLSNQLYACYAMGKDVQAMKAVVGVEALSPDDLLYLEFL 447
Score = 106 bits (254), Expect = 2e-23
Identities = 49/56 (87%), Positives = 52/56 (92%)
Frame = +1
Query: 52 DFEENGSMENVCLFLNLANDPTIERIITPRLALTAAEFLAYQCEKHVLVILTDMSS 219
DFEE GSM+NVCLFLNLANDPTIERIITPR+ALTAAEF AY C KHVLV+LTDMSS
Sbjct: 239 DFEECGSMDNVCLFLNLANDPTIERIITPRIALTAAEFFAYHCGKHVLVVLTDMSS 294
Score = 59.7 bits (138), Expect = 3e-09
Identities = 25/31 (80%), Positives = 29/31 (93%)
Frame = +1
Query: 709 GYYENRTVFESLDIGWQLLRIFPKEMLKRIP 801
G YENRT+ ESL+IGW+LLRIFP+EMLKRIP
Sbjct: 458 GRYENRTIVESLNIGWELLRIFPREMLKRIP 488
>AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical
protein Y49A3A.2 protein.
Length = 606
Score = 60.9 bits (141), Expect = 1e-09
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Frame = +2
Query: 218 RYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVE-----GRNGSITQIPILTM 382
R+AEALRE+S E+P G+P Y+ LA+ YERAGRV+ R GS+T + ++
Sbjct: 342 RWAEALREISGRLGEMPADSGYPAYLAARLASFYERAGRVKCLGSPEREGSVTIVGAVSP 401
Query: 383 PNDDITHPIPDLTGYITEGQIYVDRQLHNRQ 475
P D P+ T I + +D++L R+
Sbjct: 402 PGGDFADPVTSATLGIVQVFWGLDKKLAQRK 432
>AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical
protein H28O16.1d protein.
Length = 511
Score = 48.0 bits (109), Expect = 9e-06
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Frame = +2
Query: 218 RYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGR--NGSITQIPILTMPND 391
+ A A R++S PGR +PG ++ + + ERA ++ GS+T +P++
Sbjct: 274 KQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNNSLGGGSLTALPVIETQAG 333
Query: 392 DITHPIPDLTGYITEGQIYVDRQL 463
D++ IP IT+GQI+++ +L
Sbjct: 334 DVSAYIPTNVISITDGQIFLETEL 357
>AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical
protein H28O16.1c protein.
Length = 503
Score = 48.0 bits (109), Expect = 9e-06
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Frame = +2
Query: 218 RYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGR--NGSITQIPILTMPND 391
+ A A R++S PGR +PG ++ + + ERA ++ GS+T +P++
Sbjct: 266 KQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNNSLGGGSLTALPVIETQAG 325
Query: 392 DITHPIPDLTGYITEGQIYVDRQL 463
D++ IP IT+GQI+++ +L
Sbjct: 326 DVSAYIPTNVISITDGQIFLETEL 349
>AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical
protein H28O16.1a protein.
Length = 538
Score = 48.0 bits (109), Expect = 9e-06
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Frame = +2
Query: 218 RYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGR--NGSITQIPILTMPND 391
+ A A R++S PGR +PG ++ + + ERA ++ GS+T +P++
Sbjct: 301 KQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNNSLGGGSLTALPVIETQAG 360
Query: 392 DITHPIPDLTGYITEGQIYVDRQL 463
D++ IP IT+GQI+++ +L
Sbjct: 361 DVSAYIPTNVISITDGQIFLETEL 384
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 44.8 bits (101), Expect = 8e-05
Identities = 26/88 (29%), Positives = 42/88 (47%)
Frame = +2
Query: 218 RYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPNDDI 397
R+ +A EVSA +P G+ + TD+ ++ ER + GSIT + + +P DD+
Sbjct: 319 RFTQAGSEVSALLGRIPSAVGYQPTLATDMGSMQERITTT--KKGSITSVQAIYVPADDL 376
Query: 398 THPIPDLTGYITEGQIYVDRQLHNRQIY 481
T P P T + + R + IY
Sbjct: 377 TDPAPATTFAHLDATTVLSRGIAELAIY 404
>Z70205-2|CAA94116.1| 529|Caenorhabditis elegans Hypothetical
protein C11H1.3 protein.
Length = 529
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +2
Query: 314 IYERAGRVEGRNGSITQIPILTMP 385
IYE VEG NGS T IP +T P
Sbjct: 327 IYETVSLVEGLNGSPTPIPTVTDP 350
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,529,973
Number of Sequences: 27780
Number of extensions: 421066
Number of successful extensions: 1208
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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