Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_M23
         (888 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    29   0.075
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   6.5  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 28.7 bits (61), Expect = 0.075
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 668 VEQIVGRQSLLTYHGLHGLHVLADS 594
           +EQ+  +  L   HGLHGLH L+ S
Sbjct: 125 LEQLTNQTGLHGLHGLHGLHGLSSS 149



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 799 GYVSASPWGRYAATASRCPGTRRLCGSRST 710
           GY S  P      T ++ P T++  GSR+T
Sbjct: 23  GYASTMPMPDDMRTVTKRPKTKKSQGSRTT 52


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 265  TRTTWFPRLHVHRFGDHLRARRTC 336
            + +TW PR H++   +H    R C
Sbjct: 1678 SHSTWDPRRHMYEELNHCAPNRRC 1701



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 112 PTIERIITPRLALTAAEFLAYQC 180
           PTI++    +L + A EF   QC
Sbjct: 583 PTIQQFSFTKLPMNAGEFANLQC 605


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 234 CVRCQPPARKYP 269
           CV C PP R+ P
Sbjct: 389 CVACSPPPRQTP 400


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,883
Number of Sequences: 438
Number of extensions: 5104
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)