Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_M21
(919 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.23
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 1.2
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 1.6
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 28 1.6
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 4.9
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 6.5
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.1 bits (67), Expect = 0.23
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 501 PPPPPGXXGXXXXXPPXPP 557
PPPPPG G PP PP
Sbjct: 764 PPPPPGVAGAGPPPPPPPP 782
Score = 30.3 bits (65), Expect = 0.40
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 502 PPPPRXXXXXXXXPPPPPPXXP 567
PPPP PPPPPP P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783
Score = 29.1 bits (62), Expect = 0.92
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +1
Query: 502 PPPPRXXXXXXXXPPPPPPXXPXG 573
PPPP PPPPPP G
Sbjct: 765 PPPPGVAGAGPPPPPPPPPAVSAG 788
Score = 28.3 bits (60), Expect = 1.6
Identities = 18/50 (36%), Positives = 19/50 (38%)
Frame = +2
Query: 491 GXXXPPPPGXXXXXXXXPPXPPPXXPRXAXXFXGXRGFPPAXGXNXPPPK 640
G PPPP PP PPP A G R + PA P PK
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPP---PAVSAGGSRYYAPAPQAE-PEPK 804
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 501 PPPPPGXXGXXXXXPPXPP 557
PPPPP G PP PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPP 779
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/44 (31%), Positives = 15/44 (34%)
Frame = +1
Query: 502 PPPPRXXXXXXXXPPPPPPXXPXGRXXVSGXPGFPPRXXG*PXP 633
PPPP PPPPP P G + P P P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPA-VSAGGSRYYAPAPQAEPEP 803
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/45 (31%), Positives = 15/45 (33%)
Frame = +1
Query: 502 PPPPRXXXXXXXXPPPPPPXXPXGRXXVSGXPGFPPRXXG*PXPP 636
P P PP PP P +G P PP P PP
Sbjct: 433 PSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +1
Query: 544 PPPPPXXPXGRXXVSGXPGFPPR 612
P PPP P VS P PPR
Sbjct: 251 PAPPPIPPPSNGTVSSPPNSPPR 273
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = +1
Query: 505 PPPRXXXXXXXXPPPPPPXXPXGRXXVSGXPGFPPRXXG*PXPPQXAXXP 654
PP PPPPPP R +G PP+ P PP P
Sbjct: 325 PPIGNGSSNSSLPPPPPPP----RSNAAGSIPLPPQGRSAPPPPPPRSAP 370
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.3 bits (60), Expect = 1.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +1
Query: 502 PPPPRXXXXXXXXPPPPPP 558
PPPP PPPPPP
Sbjct: 11 PPPPPPGFEPPSQPPPPPP 29
Score = 28.3 bits (60), Expect = 1.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +1
Query: 502 PPPPRXXXXXXXXPPPPPP 558
PPPP PPPPPP
Sbjct: 12 PPPPPGFEPPSQPPPPPPP 30
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 501 PPPPPGXXGXXXXXPPXPP 557
PPPPPG PP PP
Sbjct: 12 PPPPPGFEPPSQPPPPPPP 30
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 7/42 (16%)
Frame = +1
Query: 502 PPPPRXXXXXXXXPPP-------PPPXXPXGRXXVSGXPGFP 606
PPPP PP PP P G +SG PG P
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPPAGPPAGATAISGNPGMP 1923
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -1
Query: 433 GAPXPGPGXXGGXKGXG 383
G P PGPG GG G G
Sbjct: 198 GGPPPGPGGFGGFGGFG 214
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 6.5
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = +1
Query: 508 PPRXXXXXXXXPPPPPPXXPXGRXXVSGXPGFPPRXXG*PXPPQXAXXP 654
PP P PPP P G P PP P P A P
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLP 1227
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,921,916
Number of Sequences: 5004
Number of extensions: 28888
Number of successful extensions: 170
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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