Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_M20
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    26   6.1  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    26   8.1  
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           26   8.1  

>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 290 LFSEVDSASLFCSLKKSAKSGFQIYTPP 207
           L   +D A++   LKKS +SG  IY  P
Sbjct: 479 LIKPLDQAAIRRELKKSKRSGMAIYQSP 506


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +1

Query: 103 FLLLPVYFILSIMRIYKPPGITRGQIILV 189
           F  +P++  +  +R Y+PPG+ R  + +V
Sbjct: 50  FTSIPLFSTVKHIRPYRPPGLDRDYLFVV 78


>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 186 QNNLTSCYSWWLINTHYTKNKVN 118
           +NN+     WWL + HY K+ VN
Sbjct: 147 ENNVKG--DWWLASGHYAKSVVN 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,631,361
Number of Sequences: 5004
Number of extensions: 46329
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)