Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_M20
         (879 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83125-7|CAB05619.1|  407|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U28971-4|AAK68668.1|  628|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z81017-12|CAD91635.1|  394|Caenorhabditis elegans Hypothetical p...    28   7.7  
Z78537-3|CAD91626.1|  394|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched relat...    28   7.7  

>Z83125-7|CAB05619.1|  407|Caenorhabditis elegans Hypothetical
           protein T15D6.9 protein.
          Length = 407

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = -2

Query: 320 LIFLIYFYSTLFSEVDSASLFCSLKKSAKSGFQIYTPPKTPNT 192
           L+F+I+ +    ++ + +S FC  +KS K+    Y  P+ P +
Sbjct: 14  LVFIIFLFFFQKAKFERSSCFCKSRKSGKTYDFCYENPRNPES 56


>U28971-4|AAK68668.1|  628|Caenorhabditis elegans Hypothetical
           protein B0244.10 protein.
          Length = 628

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = -1

Query: 522 DLGCRDTCFSFFRLLFIFYDF 460
           D+  RDT F+FF +LFI YDF
Sbjct: 387 DIPFRDT-FAFFAVLFIIYDF 406


>Z81017-12|CAD91635.1|  394|Caenorhabditis elegans Hypothetical
           protein C09F12.3 protein.
          Length = 394

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 133 SIMRIYKPPGITRGQIILVSVFGVLGGVYIWKPLFADFFKE 255
           +++ +Y+PP IT G  + +    +L  V +   L A+FF +
Sbjct: 53  AMVSLYRPPKITSGVFVYLKALLLLDHVMLTTTLAAEFFPQ 93


>Z78537-3|CAD91626.1|  394|Caenorhabditis elegans Hypothetical
           protein C09F12.3 protein.
          Length = 394

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 133 SIMRIYKPPGITRGQIILVSVFGVLGGVYIWKPLFADFFKE 255
           +++ +Y+PP IT G  + +    +L  V +   L A+FF +
Sbjct: 53  AMVSLYRPPKITSGVFVYLKALLLLDHVMLTTTLAAEFFPQ 93


>AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched related
           family protein 4 protein.
          Length = 960

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -1

Query: 450 FFSYLIPLSFYVRSVKHSINNDDT---RSNCYSHKD 352
           FF YL+ ++FY   +K+S + ++T    S CY   D
Sbjct: 484 FFDYLMQITFYAAILKYSGDREETGGLASCCYKKND 519


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,430,140
Number of Sequences: 27780
Number of extensions: 250584
Number of successful extensions: 730
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)