Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_M20
         (879 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    24   1.6  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    24   1.6  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   4.9  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   4.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.9  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   4.9  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   4.9  

>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 244 NLRKVVSKYIRRPRHRILIPK*FDLLLFLV 155
           N + + +KY+RR    I +P+  D LLF +
Sbjct: 108 NWQPIATKYLRRYEDNIFLPE--DCLLFTI 135


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 244 NLRKVVSKYIRRPRHRILIPK*FDLLLFLV 155
           N + + +KY+RR    I +P+  D LLF +
Sbjct: 123 NWQPIATKYLRRYEDNIFLPE--DCLLFTI 150


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 320 LIFLIYFYSTLFSEV 276
           LIF+I FYS L S +
Sbjct: 233 LIFIILFYSRLLSSI 247


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 392 TTTTPEVIATAIRTLXKGLAPLRRLIFLIYFYSTLF 285
           TT TP+ IA  I    + + P+  +IF I ++S ++
Sbjct: 433 TTMTPQEIAQWIDRRSRIVFPVAFIIFNILYWSFIW 468


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 429 LSFYVRSVKHSINNDDTRSNCY 364
           L  Y RS  H   N + RSN Y
Sbjct: 240 LQKYTRSFAHQSINKEARSNLY 261


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 320 LIFLIYFYSTLFSEV 276
           LIF+I FYS L S +
Sbjct: 233 LIFIILFYSRLLSSI 247


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 429 LSFYVRSVKHSINNDDTRSNCY 364
           L  Y RS  H   N + RSN Y
Sbjct: 235 LQKYTRSFAHQSINKEARSNLY 256


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,106
Number of Sequences: 438
Number of extensions: 3225
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)