Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_M19
         (877 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   6.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   8.5  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   8.5  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   8.5  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   8.5  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +1

Query: 532 SLISTYKGHNNFIHSIHGKNQQ 597
           S +++ + H +  H  H KN+Q
Sbjct: 43  SSLNSLRNHKSIYHRQHSKNEQ 64


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 302 FQRKNSL*LVPLMKYADGTGKLLFLLNYQNL 394
           FQ KN+L    L  Y+       F + YQN+
Sbjct: 397 FQNKNNLIPSALQSYSTSMRDPAFYMLYQNI 427


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +2

Query: 542 QLTRDIIILFILFMEKTNRL 601
           ++TR II +F++  +KT++L
Sbjct: 72  KITRYIIRMFLISQQKTSKL 91


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +2

Query: 542 QLTRDIIILFILFMEKTNRL 601
           ++TR II +F++  +KT++L
Sbjct: 55  KITRYIIRMFLISQQKTSKL 74


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 5/16 (31%), Positives = 14/16 (87%)
 Frame = +2

Query: 641 LEVENHTINWNRTLIT 688
           LE++N+ I+W++ +++
Sbjct: 102 LEIKNYNIDWDKCILS 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,483
Number of Sequences: 438
Number of extensions: 4499
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)