Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_M17
         (893 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1008 - 7987936-7988628,7988923-7989102                           38   0.011
03_06_0175 + 32152428-32153423,32153692-32153889,32154942-321551...    30   2.9  
11_04_0025 + 12382485-12382823,12382835-12382894,12382960-123830...    28   8.7  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.7  
03_01_0170 + 1389759-1391159                                           28   8.7  

>01_01_1008 - 7987936-7988628,7988923-7989102
          Length = 290

 Score = 37.9 bits (84), Expect = 0.011
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = -2

Query: 736 RKRHASRREKGGQVSGKRQGRNRRAQRGSFQGETPG 629
           R R   RR  GG+V+G+   R+RR +RG+++GE  G
Sbjct: 239 RVRRRGRRGGGGEVNGEEAARSRRRRRGAWEGEEEG 274


>03_06_0175 +
           32152428-32153423,32153692-32153889,32154942-32155121,
           32156224-32156481,32157310-32157381
          Length = 567

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
 Frame = +2

Query: 629 TRRFPLEAPSLRSPVPTLPLTGYLSAFLPSGSVALSHSSRCRYLSSV*VVRS----KLGC 796
           +RR PL  P + SP+ T+      +A    G+ A+ H +   +L +  +VR+    +L  
Sbjct: 51  SRRIPLSIPCVASPMDTVSEAAMAAAMASLGAAAVVHCNTEPHLQAS-IVRAAKSRRLPF 109

Query: 797 VHEPP-FSPTAAP 832
           V   P FSP + P
Sbjct: 110 VSSVPLFSPASTP 122


>11_04_0025 +
           12382485-12382823,12382835-12382894,12382960-12383073,
           12383187-12383837
          Length = 387

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 20/69 (28%), Positives = 25/69 (36%)
 Frame = +2

Query: 626 DTRRFPLEAPSLRSPVPTLPLTGYLSAFLPSGSVALSHSSRCRYLSSV*VVRSKLGCVHE 805
           DTR+ P  +P    P P+ PL       L       +HS     L    VV+ KL     
Sbjct: 69  DTRKTPSASPKRTPPTPSAPLLKRKHLSLILFCNYFTHSRSFINLKKKTVVKKKLAAAAS 128

Query: 806 PPFSPTAAP 832
            P  P   P
Sbjct: 129 KPAPPHPPP 137


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 313 NESAN---ARGEAVCVLGALPLPRSLTRCAR 396
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>03_01_0170 + 1389759-1391159
          Length = 466

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = +2

Query: 659 LRSPVPTLPLTGYLSAFLPSGSVALSHSSRCRYLSSV*VVRSKLGC--VHEPPFSPTAAP 832
           LRSP PTLP     +A  P+   A +    CR    + V R       +H  PF P  A 
Sbjct: 57  LRSPAPTLPSAASSAAPQPTPLHAAARVFSCRASYDLAVRRRGYHVLRLHFYPFEPALAS 116

Query: 833 YRYY 844
            R++
Sbjct: 117 ARFH 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,091,331
Number of Sequences: 37544
Number of extensions: 507725
Number of successful extensions: 1562
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1560
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)