Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_M16
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ...    30   0.37 
SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73 family...    28   2.0  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    26   6.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.1  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    26   6.1  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    26   8.1  
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    26   8.1  

>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
 Frame = -3

Query: 834 FQFPSARLSKTIHTWXHSR---AECPYVNMCADXSVKVPSPSGTTKCMPPWGDSSE---N 673
           F FPS  +   ++T+ +S    A+CP +  C       P+P+ T+   P   +SS+   +
Sbjct: 128 FYFPSGFIRGVVYTFGYSAQVIAQCPNLPTCIFHVKFSPNPTQTSPGKPSTSESSQTDTS 187

Query: 672 SIPILSPRPSPTK 634
           + P  S  P+ T+
Sbjct: 188 TRPANSQTPTTTR 200


>SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +2

Query: 617 PEEAAHLVGEGRGLR-IGIEF-SLESPQGGMHFVVPEG 724
           P EAAH  G GRG   I +   S  S  G M F++ EG
Sbjct: 235 PAEAAHAAGGGRGPELIALSHKSSNSKFGTMRFIIVEG 272


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 704 HFVVPEGEGTLTXKSAHMFTYGHSA 778
           H + PEG       S + FT+GHSA
Sbjct: 572 HIMYPEGSPGFIQHSPNGFTHGHSA 596


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -3

Query: 729 PSPSGTTKCMPPWGDSSENSIPILSPRPSPTK*AASS 619
           P PS   +  PP G+ S NS  +  P P P   AA S
Sbjct: 315 PPPSRRNRGKPPIGNGSSNS-SLPPPPPPPRSNAAGS 350


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = -2

Query: 340 SLFPLNSKFDELI*MGD--NCRPYVL 269
           SLFPL+ +F +++ +G    C PYV+
Sbjct: 876 SLFPLSPRFSKMLIIGQQHGCLPYVI 901


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 8/39 (20%), Positives = 20/39 (51%)
 Frame = -2

Query: 535 PVISYLDRLDIYPEMGQSTENLLHIDHLSTLYIFEIASH 419
           P++ Y D  D++P +    E+ + + +L  +  ++   H
Sbjct: 6   PIVQYYDPFDLWPSIATDIESKIPLRNLQWVESYQYKKH 44


>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 564 STEDRPWTITQENFTFKYLKKQLT*LVKAEGSELVLNFHLNLPK 695
           S +  P ++T      +YLKK L   + +  S++  N HL +P+
Sbjct: 305 SRDKYPHSMTVSPSNARYLKKHLDDTIPSNVSDINHNDHLKIPQ 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,561,968
Number of Sequences: 5004
Number of extensions: 77034
Number of successful extensions: 198
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)