Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_M16
(872 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0369 - 13136146-13136175,13136237-13136908,13136926-131370... 31 1.2
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437... 29 3.7
07_03_1293 - 25563431-25563545,25564078-25564196,25564300-255644... 29 6.4
01_05_0177 - 18968803-18968855,18969053-18969109,18969975-18970518 29 6.4
11_04_0224 + 15059904-15059910,15059955-15060185,15060345-150604... 28 8.5
09_01_0091 + 1298829-1298898,1299461-1299535,1299642-1299799,130... 28 8.5
02_02_0707 + 13144147-13144788,13145115-13148663 28 8.5
>05_03_0369 -
13136146-13136175,13136237-13136908,13136926-13137016,
13137184-13137416,13137459-13137731,13137877-13138265,
13138325-13139156,13139847-13139922,13140027-13140414,
13141395-13141748,13142069-13142333,13143366-13143716
Length = 1317
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = -2
Query: 586 VQGLSSVLQLNDTERMLPVISYLD----RLDIYPEMGQSTENLLHIDHLSTLYIFEIASH 419
+ G S +++L +T L + YL+ R+ PE + +NL+H+D + ++ +++ H
Sbjct: 669 LSGCSRLVELPETVGKLDALMYLNLSGSRIVELPESFRELKNLVHLDLSNCTHLTDVSEH 728
Query: 418 LDECSVSY 395
L + Y
Sbjct: 729 LGSLNRLY 736
>01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,
4378900-4378970,4379038-4379144,4379241-4379711,
4379791-4379976,4380132-4380425,4380820-4381434,
4382219-4382615,4382768-4382850,4383397-4383567,
4384046-4384243,4384754-4385314,4385401-4385460,
4385553-4385869,4385980-4386403,4386539-4387006,
4387093-4387209,4387306-4387427,4387506-4388247,
4388453-4388485,4388625-4388879,4388975-4389160,
4390115-4390453,4391293-4392045
Length = 3017
Score = 29.5 bits (63), Expect = 3.7
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +1
Query: 370 ELTVVPLKDNLRYIRLNAKQSRIYRVCLNDQYEANFQYFDPFLDICQADPNTRSLEAFSQ 549
E T +P+ + R+ L+ S + +C + + F+ FL C P RSL+AF Q
Sbjct: 1961 EETKIPVDIDERFASLS---SMVAVLCEQQLFLPLLRAFEMFLPSCSLLPFIRSLQAFCQ 2017
Query: 550 YHLTAA 567
L+ A
Sbjct: 2018 MRLSEA 2023
>07_03_1293 -
25563431-25563545,25564078-25564196,25564300-25564467,
25564565-25564627,25564709-25564816,25565125-25565237,
25565313-25565609,25565724-25565802,25566116-25566224,
25566324-25566365,25567023-25567153,25568100-25568648
Length = 630
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +2
Query: 563 QHRRQTLDHNSGELHIQIPEEAAHLVGE-GRGLRIGIEFS 679
+H RQ L G IPEE + GE GRGL G F+
Sbjct: 99 KHIRQALARRHGPPRPPIPEEGGDVEGEGGRGLDKGFGFN 138
>01_05_0177 - 18968803-18968855,18969053-18969109,18969975-18970518
Length = 217
Score = 28.7 bits (61), Expect = 6.4
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -2
Query: 583 QGLSSVLQLNDTERMLPVISYLDRLDIYPEMGQST 479
QGLS + + T RML S D LD Y ++G+ST
Sbjct: 117 QGLSPLQKCTTTMRMLAYGSPADSLDEYLKIGKST 151
>11_04_0224 +
15059904-15059910,15059955-15060185,15060345-15060424,
15060497-15060547,15060548-15060670,15062151-15062184,
15062363-15062441,15062779-15062848,15075787-15075889,
15076247-15076284,15076449-15076550,15077027-15077107,
15077506-15077657,15077731-15077857,15078193-15078311,
15078636-15078749,15079001-15079214
Length = 574
Score = 28.3 bits (60), Expect = 8.5
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +2
Query: 482 TLTHFWIYVKPIQIRDHWKHSLSII*LQHRRQTLDHNSGELHIQIPEEAAHLVGEGRGLR 661
T T WI + + D W+ + QTL ++ I I E+ A +GE +
Sbjct: 476 TSTQAWIRFLNLSVVDDWRPWYVAGQVAGTTQTLTTHANPTPISIFEDWASKIGEIDEVT 535
Query: 662 IGIEFSL-ESPQGG 700
IG+ SL SP G
Sbjct: 536 IGVSLSLGTSPPTG 549
>09_01_0091 +
1298829-1298898,1299461-1299535,1299642-1299799,
1300629-1300979
Length = 217
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 753 CADXSVKVPSPSGTTKCMPPWGDSSENSIPILSP 652
C ++ +P P TT +PP + S + PIL P
Sbjct: 155 CLGVAMGLPPPGLTTPSLPPSSEKSPVTFPILVP 188
>02_02_0707 + 13144147-13144788,13145115-13148663
Length = 1396
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 74 SINDVQTVKFCCVLNS*ITTNNLDKLLFIW 163
S++D T FC L +T NN D+++ +W
Sbjct: 974 SLDDESTSVFCLELLITVTLNNRDRIVLLW 1003
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,886,677
Number of Sequences: 37544
Number of extensions: 461205
Number of successful extensions: 1043
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -