Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_M16
         (872 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    33   0.35 
U28928-10|AAN63432.2|  388|Caenorhabditis elegans Hypothetical p...    30   1.9  
Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical pr...    30   2.5  
Z72504-4|CAH60755.1|  653|Caenorhabditis elegans Hypothetical pr...    30   2.5  
X91045-1|CAA62505.1|  693|Caenorhabditis elegans let-653 protein.      30   2.5  
U29244-18|AAC71099.2|  515|Caenorhabditis elegans Hypothetical p...    29   4.3  
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
           protein Y40C5A.3 protein.
          Length = 2344

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = -3

Query: 786 HSRAECPYVNMCADXSVKVPSPSGTTKCMPPWGDSS---ENSIPILSPRPSPTK*AASSG 616
           H  A  P         V  P+PS   K   P G+S    E SIP ++P PSP++ ++S  
Sbjct: 541 HEMAPAPAPQPSPSSPVYGPTPSEPAKPSMPSGESPAQPEPSIPAVNPEPSPSQPSSSGP 600

Query: 615 I 613
           I
Sbjct: 601 I 601


>U28928-10|AAN63432.2|  388|Caenorhabditis elegans Hypothetical
           protein C44B7.12 protein.
          Length = 388

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = +1

Query: 283 DNCRPFKLAHQILSLTGISFERRSVIGFVELTVVPLKDNLRYIRLNAKQSRIY 441
           D   PF+ A  IL L G + +R +VI  VEL+  P  D  R ++L     R +
Sbjct: 186 DRRMPFETAAHILGLIGEAQQRTNVIVGVELSGDPHLDGRRLLKLFVAARRFH 238


>Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical
           protein C29E6.1a protein.
          Length = 812

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +3

Query: 504 MSSRSKYEITGSILSVS--FNCSTEDRPWTITQENFTFKYLKKQLT*LVKAEGSELVLNF 677
           +S +S+   TG+I  +   F C TE +  T     F ++ + K  +  +K +G+E+VL  
Sbjct: 229 VSVKSRLPYTGAIYGLYDFFTCRTEPKEATEFDHFFPYQTVSKNCSDSIKYKGNEMVLEV 288

Query: 678 HLN 686
            L+
Sbjct: 289 VLS 291


>Z72504-4|CAH60755.1|  653|Caenorhabditis elegans Hypothetical
           protein C29E6.1b protein.
          Length = 653

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +3

Query: 504 MSSRSKYEITGSILSVS--FNCSTEDRPWTITQENFTFKYLKKQLT*LVKAEGSELVLNF 677
           +S +S+   TG+I  +   F C TE +  T     F ++ + K  +  +K +G+E+VL  
Sbjct: 229 VSVKSRLPYTGAIYGLYDFFTCRTEPKEATEFDHFFPYQTVSKNCSDSIKYKGNEMVLEV 288

Query: 678 HLN 686
            L+
Sbjct: 289 VLS 291


>X91045-1|CAA62505.1|  693|Caenorhabditis elegans let-653 protein.
          Length = 693

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +3

Query: 504 MSSRSKYEITGSILSVS--FNCSTEDRPWTITQENFTFKYLKKQLT*LVKAEGSELVLNF 677
           +S +S+   TG+I  +   F C TE +  T     F ++ + K  +  +K +G+E+VL  
Sbjct: 229 VSVKSRLPYTGAIYGLYDFFTCRTEPKEATEFDHFFPYQTVSKNCSDSIKYKGNEMVLEV 288

Query: 678 HLN 686
            L+
Sbjct: 289 VLS 291


>U29244-18|AAC71099.2|  515|Caenorhabditis elegans Hypothetical
           protein ZK1248.1 protein.
          Length = 515

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 790 PCVDSFAEPCTWKLESLLM 846
           PCVD +A  C WK+E   M
Sbjct: 42  PCVDFYAHVCPWKVERYFM 60


>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical protein
            F35A5.1 protein.
          Length = 1274

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 729  PSPSGTTKCMPPWGDSSENSIPILSPRP 646
            P  +   K  PPW D  E S P+ +P P
Sbjct: 1046 PVKNPVKKWKPPWEDDDEPSEPVSAPEP 1073


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,578,981
Number of Sequences: 27780
Number of extensions: 427140
Number of successful extensions: 1022
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)