Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_M16
         (872 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.8  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   2.8  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   3.7  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   6.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   8.5  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 577 LSSVLQLNDTERMLPVISYLDRLDIY 500
           L+    ++ T   LP ISY+  +D+Y
Sbjct: 261 LTMTTLMSSTNAALPKISYVKSIDVY 286


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 577 LSSVLQLNDTERMLPVISYLDRLDIY 500
           L+    ++ T   LP ISY+  +D+Y
Sbjct: 261 LTMTTLMSSTNAALPKISYVKSIDVY 286


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 577 LSSVLQLNDTERMLPVISYLDRLDIY 500
           L+    ++ T   LP ISY+  +D+Y
Sbjct: 200 LTMTTLMSSTNAALPKISYVKSIDVY 225


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 782 LWXHVWIVLLSLALG 826
           +W  +WIV L+LA G
Sbjct: 1   MWHFLWIVFLALANG 15


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 620 EEAAHLVGEGRGLRIGIEFSLESPQGGMHFVVPE 721
           E    + GE R   I  + S+E P   +H V PE
Sbjct: 11  EYIRQVYGEDRWEEIRRQASVEQPSFSVHQVYPE 44


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -2

Query: 871 LHMNSWGHSSTVIPVSKCKAQQ 806
           +H+ SW H S  I ++    +Q
Sbjct: 175 IHIASWSHGSNEIKLNSLDTEQ 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,120
Number of Sequences: 438
Number of extensions: 5303
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)