Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_M13
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    78   1e-15
SPBC21.04 |med8|sep15|mediator complex subunit Med8|Schizosaccha...    27   2.6  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    26   6.1  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    26   8.0  

>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 78.2 bits (184), Expect = 1e-15
 Identities = 44/99 (44%), Positives = 60/99 (60%), Gaps = 5/99 (5%)
 Frame = +1

Query: 469 EEKDAYTLAKCYFDCQEYDRAAHFLENCTSSKCVFLHKYSLYMSSEXK-RLDNATDLGTE 645
           EEK+ Y LAK YFDC+E++RAA+ L+NC SSK +FL  YS Y++ E K   +N T L T 
Sbjct: 86  EEKNIYLLAKSYFDCKEFERAAYTLQNCKSSKSIFLRLYSKYLAGEKKSEEENETLLNTN 145

Query: 646 --NSESNQVLLDLLSFFKT--NSNNLDGYLLYLEGVVLK 750
              S +N+    +    ++     N D YLLYL GVV +
Sbjct: 146 LTLSSTNREFYYISEVLESLHYQGNKDPYLLYLSGVVYR 184



 Score = 33.1 bits (72), Expect = 0.053
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +3

Query: 297 QIDLTQVRIDILQGIRECNSRGLVQTTKWLAEL 395
           Q  L ++R  +L+ I EC+ RGLV   +W AE+
Sbjct: 17  QEQLREIRNCLLKCISECSERGLVYAVRWAAEM 49


>SPBC21.04 |med8|sep15|mediator complex subunit
           Med8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 631 DLGTENSESNQVLLDLLSFFKT 696
           D  TE   +NQ+L D+LSF K+
Sbjct: 176 DRATEEQNANQMLTDILSFMKS 197


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 433 NLQKSLNEDITPEEKDAYTLAK 498
           N  K+L+EDITP+  +  T+AK
Sbjct: 581 NAVKTLDEDITPQSSNWQTVAK 602


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = +1

Query: 592 YMSSEXKRLDNATDLGTENSESNQVLLDLLSFFKTNSNNLDGYLLYLEGVVL 747
           YM  E +    + +  +  S++ + +  +LSFF + S N+  Y L    +V+
Sbjct: 435 YMGPEVEEDKVSEEAASAKSKNKKGIFSILSFFTSGSKNIGIYSLLSRVLVI 486


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,992,394
Number of Sequences: 5004
Number of extensions: 57666
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)