Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_M13
         (870 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0235 - 16702768-16702956,16703956-16704492,16705084-167052...    30   2.1  
06_03_1131 + 27872870-27872958,27873036-27873281,27874058-278741...    29   3.7  
01_06_0261 + 27978341-27978391,27978539-27978683,27978794-279788...    29   3.7  

>02_03_0235 -
           16702768-16702956,16703956-16704492,16705084-16705233,
           16705310-16705625,16707005-16707286,16707895-16707971,
           16708121-16708186,16708700-16709246,16709435-16709565,
           16709642-16709746,16709859-16710039,16710123-16710185,
           16711000-16711109,16711576-16711638,16711859-16712191
          Length = 1049

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = -3

Query: 715 HRGYWSWF*RKTISPKELDLIHYFLYPGLWHYLNAXSH*TCTKSICEEKRISNSCSSLKN 536
           HR  W  + +    P+  DL+   L P  +H+ NA +         EEK   + CS   N
Sbjct: 332 HRRGWQDYFKSYCIPE--DLVPRILSPAYFHHYNAQTPDNTNAKSDEEKDTKSVCSKENN 389

Query: 535 GQ 530
           G+
Sbjct: 390 GE 391


>06_03_1131 +
           27872870-27872958,27873036-27873281,27874058-27874163,
           27874665-27875209,27875455-27875914,27876234-27876319,
           27877092-27877194
          Length = 544

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/60 (26%), Positives = 25/60 (41%)
 Frame = +3

Query: 318 RIDILQGIRECNSRGLVQTTKWLAELNYALRDHKITSEEPSEISERGHNAGGKGCLHISK 497
           R+++    R+   RGL    KW AEL   + D   T    S +     +  G   LH+ +
Sbjct: 9   RVELRAAARQLGERGLYSAAKWAAELLVGI-DPDATPAPSSAMDTPSSSGSGGHLLHLHR 67


>01_06_0261 +
           27978341-27978391,27978539-27978683,27978794-27978861,
           27979630-27980073,27980163-27980681,27981002-27981214,
           27981650-27981805,27982753-27982941
          Length = 594

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
 Frame = +1

Query: 457 DITPE----EKDAYTLAKCYFDCQEYDRAAHFLENCTSSKCVFLH-KYSLYMSSEX--KR 615
           D+TP      +DAY L        +YD+A  F+    S   +    KY+++ S+    KR
Sbjct: 327 DVTPSPVAMSRDAYNLPDFV---TKYDQALFFVIKSYSEDDIHKSIKYNVWASTPNGNKR 383

Query: 616 LDNATDLGTENSESNQVLLDLLSFFKTNSN 705
           LDNA  L  E          +  FF  N++
Sbjct: 384 LDNAFKLAQERVAEKGTKCPMFLFFSVNAS 413


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,651,152
Number of Sequences: 37544
Number of extensions: 317613
Number of successful extensions: 676
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)