Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_M13
         (870 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69883-1|CAA93743.1|  829|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U58750-1|AAB00641.1|  307|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U53338-5|AAA96193.1|  463|Caenorhabditis elegans Hypothetical pr...    29   3.3  

>Z69883-1|CAA93743.1|  829|Caenorhabditis elegans Hypothetical
           protein C27C12.7 protein.
          Length = 829

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +1

Query: 526 RAAHFLENCTSSKCVFLHKYSLYMSSEXKRLDNATDLGTENSESNQ 663
           +A ++  N +S+  V++H Y+LY   + ++ D A  L    S  N+
Sbjct: 202 QAFYWNPNASSNDFVYVHNYNLYYQKDPEKPDGAIQLTVGGSTFNR 247


>U58750-1|AAB00641.1|  307|Caenorhabditis elegans Hypothetical
           protein F55G1.7 protein.
          Length = 307

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -3

Query: 451 SEISEGSSEVIL---WSLKA*FNSASHFVVCTRPRLLHSRI 338
           S +   S EV+L   W +    N  S F+VC R  LL+SRI
Sbjct: 45  STLQSSSDEVLLPLYWKMAENPNVPSRFMVCLRESLLNSRI 85


>U53338-5|AAA96193.1|  463|Caenorhabditis elegans Hypothetical
           protein C05E11.7 protein.
          Length = 463

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 270 LSMHPKSDIQIDLTQVRIDILQGIRECNSRGLV-QTTKWLAELN 398
           LS+   +  Q+D  +    ++   +ECNSRGL+     W++E N
Sbjct: 119 LSLPASTGCQLDDNEYGKQVISCKKECNSRGLICMMRTWISEQN 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,140,896
Number of Sequences: 27780
Number of extensions: 312141
Number of successful extensions: 820
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)