Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_M12
         (871 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    28   0.13 
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    26   0.52 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   1.2  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    25   1.2  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   3.7  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 17/68 (25%), Positives = 33/68 (48%)
 Frame = +3

Query: 411 LQRERNEAQRKETEKEQQHETIPNQNPIINLSEKLNPRKRKFESHVVNTYSDTEQQHETI 590
           + +E++    KET  +++ +T     P+I+ S K    ++K E   +N +  T +Q   +
Sbjct: 777 VNKEQSPNSTKETTPKKERKTATTTQPVIS-SRK---EQKKSEEKNINDHCVTTEQSVVV 832

Query: 591 PNQNPIIN 614
            N    IN
Sbjct: 833 TNVTTTIN 840



 Score = 23.0 bits (47), Expect = 3.7
 Identities = 19/117 (16%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
 Frame = +3

Query: 423  RNEAQRKETEKEQQHETIPNQNPIINLSEKLNPRKRKFESHVVNTYSDTEQQHETI-PNQ 599
            +++ Q ++++++QQ +TI       ++ +  N +++  + HV+   +    Q + + P Q
Sbjct: 973  QSQQQSQQSQQQQQQQTIVTNQAGKSILQTANIKQQSPQQHVLPGKTLLASQIKLVSPGQ 1032

Query: 600  NPIINLSEKLNPRKRKFESHVVNTYSDTEKKRLEAMKQKRQEFKQKQMIIKTGLSAV 770
               +     L  +       +  + S  + ++++  + KR    Q+Q I  +G+  +
Sbjct: 1033 IKSLLTGHGLQGQ----TIFIKQSPSSNQSQQIQQQQLKRVVTNQQQSIQTSGMQRI 1085


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +3

Query: 351 EEFKGSRLYVTRARESFLERLQRERNEAQRKETE--KEQQHETIPNQNPIINLSEKL 515
           + +K  R Y  + RE+  ER +  R   + KE++      ++TI N N   N ++KL
Sbjct: 281 KSYKNEREY-RKYRETSKERFRDRRERERSKESKIISSLSNKTIHNNNNYKNYNKKL 336


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +3

Query: 372 LYVTRARESFLERLQRERNEAQRKETEKEQQH 467
           LY     ESF +R QRE     RK  EK  +H
Sbjct: 430 LYCLAGDESFRKRRQREAAGNCRKRGEKIARH 461


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 366 SRLYVTRARESFLERLQRERNEAQRKETEKEQQHE 470
           S L   R  +S   R Q  +NE QRKE E+ ++ E
Sbjct: 43  SSLNSLRNHKSIYHR-QHSKNEQQRKEMEQMRERE 76


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +1

Query: 382 LELVKVFLKDYKEKGMKHKERKQKRNSSMRLYPTKIQSL 498
           L   K F+K  +E+  KH   K++ +   R    +++ L
Sbjct: 90  LTKAKRFIKSLEERERKHAVHKEQLSREQRFLRRRLEQL 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,460
Number of Sequences: 438
Number of extensions: 4661
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)