Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_M11
         (940 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.57 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.71 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   7.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   9.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.57
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +1

Query: 592 GAPPPPXPXXXGXXXXPPXPGXP 660
           GAP PP P        PP P  P
Sbjct: 414 GAPMPPIPNMSNMSGMPPLPNMP 436



 Score = 25.0 bits (52), Expect = 0.99
 Identities = 12/40 (30%), Positives = 12/40 (30%)
 Frame = +1

Query: 748 PPPPGXXXNXPXPXXGGXPPXGXXXXXPAXPPXPPPPXPP 867
           P P       P     G PP       P  PP  PP   P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 25.0 bits (52), Expect = 0.99
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = +3

Query: 666 GPXXXPXXAXXAPXPXPPPXXXXXXPPPPPP 758
           GP   P  +  AP    PP      PP  PP
Sbjct: 22  GPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 24.2 bits (50), Expect = 1.7
 Identities = 12/41 (29%), Positives = 12/41 (29%)
 Frame = +1

Query: 757 PGXXXNXPXPXXGGXPPXGXXXXXPAXPPXPPPPXPPXPPP 879
           P      P P     P        P     PPP  PP  PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 24.2 bits (50), Expect = 1.7
 Identities = 12/36 (33%), Positives = 12/36 (33%)
 Frame = +1

Query: 832 AXPPXPPPPXPPXPPPXXXXXXPSPXPPRGXXXXXP 939
           A  P P P   P  P       PS  PP G     P
Sbjct: 20  APGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 22.6 bits (46), Expect = 5.3
 Identities = 14/53 (26%), Positives = 16/53 (30%), Gaps = 2/53 (3%)
 Frame = +1

Query: 751 PPPGXXXNXPXPXXGGXPPXGXXXXXPAXPPXP--PPPXPPXPPPXXXXXXPS 903
           P  G     P P      P       P+  P P  PP  PP   P      P+
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPA 68


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.75
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 847 PPPPXPPXPPP 879
           PP P PP PPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.6 bits (46), Expect(2) = 0.71
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 838 PPXPPPPXPP 867
           PP P PP PP
Sbjct: 338 PPKPAPPPPP 347



 Score = 21.0 bits (42), Expect(2) = 0.71
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +1

Query: 841 PXPPPPXPPXPPP 879
           P PPPP P    P
Sbjct: 341 PAPPPPPPSSSGP 353


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -1

Query: 331  VSHGGGGAXPQQXXXGGGGGXXXXSGGG 248
            +S GGGG+       GG GG    S  G
Sbjct: 1702 LSEGGGGSLAGLGGLGGLGGAAEASAAG 1729


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -1

Query: 331  VSHGGGGAXPQQXXXGGGGGXXXXSGGG 248
            +S GGGG+       GG GG    S  G
Sbjct: 1698 LSEGGGGSLAGLGGLGGLGGAAEASAAG 1725


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 89  KSKQIIEVIKPNNLNLKXFPIS 24
           ++K ++ VIKP N+N +  P S
Sbjct: 764 RNKALLPVIKPANVNKEQSPNS 785


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 358  PXGGXXXPPPPP 393
            P  G   PPPPP
Sbjct: 1852 PVSGSPEPPPPP 1863


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 310,286
Number of Sequences: 438
Number of extensions: 16346
Number of successful extensions: 39
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30718506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)