Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_M10
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    27   4.6  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.1  

>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = +3

Query: 312 VRGIYGFKVRNGPDGAEGYWVINAKEGKGKVTYNGSEKPDVTFTISDEDVADLISGKLNP 491
           V+  YG          EG+  +  KEG  +++ +   + +      D     L++  +  
Sbjct: 580 VKNTYGLNFTINLKAVEGFRTVELKEGGSELSVDNENRKEYVLRYVDY----LLNTTVKK 635

Query: 492 Q-KAFFQGKIKIQGNMGLAM 548
           Q  AFF G +K+ G   +++
Sbjct: 636 QFSAFFDGFMKVCGGNAISL 655


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +3

Query: 72  FRVPGSPVVYREVPRARIALQHNLGLGGAVVITMYRKGFSNVTP-NNVAAVADN 230
           F  PG   V +E          NL     V +T+YR G S +TP   +A+  DN
Sbjct: 20  FSAPGPNAVLQEGGGVNTVSWSNL-TSSTVTLTLYRGGNSALTPIETIASDIDN 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,053,148
Number of Sequences: 5004
Number of extensions: 60811
Number of successful extensions: 165
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)