Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_M10
         (873 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0855 - 32271631-32271712,32271823-32271922,32272012-322720...    62   6e-10
01_03_0268 + 14436631-14436756,14436866-14436929,14437001-144371...    60   3e-09
06_01_0762 + 5699619-5699744,5699831-5699891,5699979-5700078,570...    45   7e-05
03_01_0546 - 4089502-4089661,4089959-4090025,4091243-4091684           31   1.2  
04_03_0068 - 10631827-10631947,10632037-10632112,10632152-106330...    30   2.1  
03_06_0710 + 35676497-35677204,35677837-35677921,35679722-35679798     29   6.4  

>02_05_0855 -
           32271631-32271712,32271823-32271922,32272012-32272072,
           32272169-32272294
          Length = 122

 Score = 62.1 bits (144), Expect = 6e-10
 Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
 Frame = +3

Query: 300 LIEKVRGIYGFKVRNGPDGA-EGYWVINAKEGK-GKVTYNGSEKPDVTFTISDEDVADLI 473
           L+EK+  +Y   +        E  +V++ K+G   K  Y G  KPD TF+ +D+D   + 
Sbjct: 27  LVEKIGFVYQLNISPKKLAFDEEVFVVDLKKGVVSKGPYEG--KPDATFSFTDDDFLAIS 84

Query: 474 SGKLNPQKAFFQGKIKIQGNMGLAMKLT 557
           SGKLNPQ AF  GK+KI+G++  A K T
Sbjct: 85  SGKLNPQMAFIMGKLKIKGSISAAQKFT 112


>01_03_0268 +
           14436631-14436756,14436866-14436929,14437001-14437100,
           14437187-14437478
          Length = 193

 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
 Frame = +3

Query: 300 LIEKVRGIYGFKVRNGPDG--AEGYWVINAKEGK-GKVTYNGSEKPDVTFTISDEDVADL 470
           L+E +  +Y   +     G   E + V++ K+G   K  Y G  KPD TF+ +D+D   +
Sbjct: 27  LVEMIGFVYQLNISPKKLGFDEEVFIVVDLKKGVVSKGPYEG--KPDATFSFTDDDFLAI 84

Query: 471 ISGKLNPQKAFFQGKIKIQGNMGLAMKLT 557
            SGKLNPQ  F  GK+KI+G++  A K T
Sbjct: 85  SSGKLNPQMVFIMGKLKIKGSISAAQKFT 113


>06_01_0762 +
           5699619-5699744,5699831-5699891,5699979-5700078,
           5700436-5700560,5700631-5700706,5701122-5701164
          Length = 176

 Score = 45.2 bits (102), Expect = 7e-05
 Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
 Frame = +3

Query: 279 MQTDQDXLIEKVRG-IYGFKVRNGPDGA-EGYWVINAKEGK-GKVTYNGSEKPDVTFTIS 449
           M TD    I K  G +Y F +     G  E  +V++ K+G+  K  Y G  KPD TF+ +
Sbjct: 19  MATDAGKDIAKKVGLVYQFNIAPKKIGVDEEIFVVDLKKGEVTKGPYEG--KPDATFSFT 76

Query: 450 DEDVADLISGKLNPQKAFFQ 509
           D D   + +GK+NPQ AF +
Sbjct: 77  DSDFLSIATGKMNPQIAFIR 96


>03_01_0546 - 4089502-4089661,4089959-4090025,4091243-4091684
          Length = 222

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +3

Query: 318 GIYGFKVRNGPDGAEGYWVINAKEGKGKVTYNGSEKPDVTFTISDEDVADLISGK 482
           G+ G K+      A   W  +A++G G+  Y GS  PD  F     D  D ++ K
Sbjct: 103 GLAGLKMARAASTASR-WRASAEQGSGEDDYGGSVVPDAGFLGGGRDGGDFVNLK 156


>04_03_0068 -
           10631827-10631947,10632037-10632112,10632152-10633021,
           10650975-10651599
          Length = 563

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
 Frame = +3

Query: 153 GAVVITMYRKGFSNVTPNNVAAVADN---PEGFKVFKYM------KILEEAMQTDQDXLI 305
           G+V   M + G ++V   NV  V      PE  K F+ M      + L   MQT +  L+
Sbjct: 13  GSVKEKMLKLGLTDVNEGNVVPVDPEKFTPEQKKEFEAMLQQAQDQFLNSFMQTRKGTLV 72

Query: 306 EKVRGIYGFKVRNGPDGAEGYWVINAKEGKGKVTYNGSEKPDV 434
           +K    Y  KV     G       ++K+G GK   NGS +P +
Sbjct: 73  QK----YKIKVVADDPGTS-----SSKDGDGKQAPNGSAQPSI 106


>03_06_0710 + 35676497-35677204,35677837-35677921,35679722-35679798
          Length = 289

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
 Frame = +1

Query: 217 PSPTTRKALRSSNT*RSLKRPCKPTRTX*SRKSAGSTVSRSETVQ-TAPRVTGSSMRKKA 393
           P P   K  +S    R      KPT T   +K   S   + E  Q +AP  T S   K+A
Sbjct: 87  PKPRKHKGAKSEKPHRVSGEGEKPTPTKKKKKKESSKEPKREKQQASAPMSTPSKKNKEA 146

Query: 394 KGKSPTTALKNPT 432
           K  +       PT
Sbjct: 147 KRDTGGAGKPTPT 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,916,729
Number of Sequences: 37544
Number of extensions: 447570
Number of successful extensions: 1102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)