Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_M08
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    28   1.5  
SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual         26   8.1  

>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/71 (25%), Positives = 35/71 (49%)
 Frame = +2

Query: 458 LVDCLNGKIAITQVANLLLCLYANEAVGFGILKEKINAIAQYLEGPLKQVASS*YVILNN 637
           L+ C NG IA  + A   L L   +     ++++K+N  ++ + GP  Q AS   +    
Sbjct: 6   LLRCQNG-IASKRAA---LSLKGFKTSSINLVEKKLNKYSETITGPKSQGASQAMLYATG 61

Query: 638 YEQNNMRSPKI 670
             + +M+ P++
Sbjct: 62  LNEEDMKKPQV 72


>SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 293 GVENTLLLNHQGALLAYSGYNDKDARVTAAIAS 391
           GV  TL  N+ G + AY G  +K    TAA+ S
Sbjct: 312 GVGRTLK-NNNGVIAAYKGIFEKVIEATAAVTS 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,874,786
Number of Sequences: 5004
Number of extensions: 50282
Number of successful extensions: 131
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)