Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_M08
         (874 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.91 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   1.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   1.6  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   6.4  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   6.4  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 0.91
 Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = +2

Query: 233 AFKMLKPKALTEVLSQANTGGVENTLLLNH---QGALLAYSGYNDKDARVTAAIASNVWS 403
           + +  KP  LTE L   +   +E  ++L H   + ++ A     D   + T  ++++  +
Sbjct: 630 SMESFKPPTLTESLLNRHNEDMEKLMMLKHREFRSSIKASDKLKDSRIKTTEKLSTDPNT 689

Query: 404 AYEKHGRNVFKEDGLH 451
            ++ +  +  K  G H
Sbjct: 690 HFQVNQSHGIKRSGSH 705


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +2

Query: 356 DKDARVTAAIASNVWSAYEKHGRNVFKEDGLHLI 457
           +K++R++AAI S      +    N++ E GL+++
Sbjct: 329 NKESRISAAIDSGYILNNDGKWHNIYSEKGLNIL 362


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +2

Query: 356 DKDARVTAAIASNVWSAYEKHGRNVFKEDGLHLI 457
           +K++R++AAI S      +    N++ E GL+++
Sbjct: 329 NKESRISAAIDSGYILNNDGKWHNIYSEKGLNIL 362


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +1

Query: 13  YXSXYRESLR--FEYILTATVFLIVVKSYVKVENRNYPKN 126
           Y S  + ++R  F   L A +F +   +YV +    YP+N
Sbjct: 143 YRSGLKRAIRSIFGAWLIALIFAMPFATYVDINYVEYPQN 182


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 506 LLLCLYANEAVGFGILKEKIN 568
           L LCL   +A+ FG++ E  N
Sbjct: 181 LALCLAVPQAIQFGVVYENKN 201


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,382
Number of Sequences: 438
Number of extensions: 3785
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)