Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_M06
(871 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ... 139 7e-32
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ... 103 6e-21
UniRef50_UPI00015C63F8 Cluster: hypothetical protein CKO_pCKO3p0... 83 1e-14
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi... 76 1e-12
UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p0... 66 1e-09
UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1; ... 63 1e-08
UniRef50_P03845 Cluster: Putative uncharacterized protein 1; n=4... 57 7e-07
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE... 56 2e-06
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ... 51 4e-05
UniRef50_P03846 Cluster: Putative uncharacterized protein 1; n=2... 50 6e-05
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ... 47 7e-04
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru... 45 0.002
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma... 44 0.005
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob... 40 0.082
UniRef50_A3N6N0 Cluster: Putative uncharacterized protein; n=4; ... 35 3.1
UniRef50_Q2K0C2 Cluster: Hypothetical conserved protein; n=2; Rh... 34 4.1
UniRef50_A3S1G4 Cluster: Putative uncharacterized protein; n=1; ... 34 5.4
UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1; ... 34 5.4
UniRef50_Q9HHM4 Cluster: Vng6323h; n=1; Halobacterium salinarum|... 33 7.1
UniRef50_A5CM45 Cluster: Putative xylosidase, glycosyl hydrolase... 33 9.4
UniRef50_A4Q8I4 Cluster: MobA protein; n=1; Listonella anguillar... 33 9.4
>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
root|Rep: Putative uncharacterized protein - Salmonella
typhimurium
Length = 127
Score = 139 bits (337), Expect = 7e-32
Identities = 62/63 (98%), Positives = 62/63 (98%)
Frame = +1
Query: 550 PXTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRFLI 729
P TSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRFLI
Sbjct: 22 PLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRFLI 81
Query: 730 AHA 738
AHA
Sbjct: 82 AHA 84
Score = 73.3 bits (172), Expect = 7e-12
Identities = 53/129 (41%), Positives = 61/129 (47%), Gaps = 2/129 (1%)
Frame = +2
Query: 488 SKRPGTVKRPRCWRFSIRLRPPXRASQKSTLKSEVAKPDRTIKIPGVSPWKLPRALSCSD 667
SK+ T R RFSI P + K + + + K P + P
Sbjct: 2 SKKQSTGTSQRRCRFSIG-SAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFR 60
Query: 668 PAAYRIPVRLSPFGKRGAFS*LTL--VGISVRCRSFAPSWAVCTNPPFSPTAAXLSGNYR 841
P R+P PF R A+ L VGISVRCRSFAPSWAVCTNPPFSPTAA
Sbjct: 61 PC--RLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSPTAAPYPVTIV 118
Query: 842 LESTRXXTT 868
L TR TT
Sbjct: 119 LSPTRKDTT 127
>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 147
Score = 103 bits (247), Expect = 6e-21
Identities = 61/121 (50%), Positives = 65/121 (53%)
Frame = +1
Query: 319 RGEAVCVLGALPLPRSLTRCARSFGCGERYQLTQRR*YGYPQNQGDNAGKNMXXXXXXXX 498
R +C G +PLPRSLTR ARSFGCGERY+LT GD N
Sbjct: 26 RVSRICDTGDIPLPRSLTRYARSFGCGERYRLTD----------GDG---NFLEDTRKTL 72
Query: 499 XXXXXXXXXXFFHQAPPPXTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRL 678
F P TSI K DAQ+ GGETRQDYKD RRFPL APSCALLF P L
Sbjct: 73 SKEEIRPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKDPRRFPLVAPSCALLFLPFGL 132
Query: 679 P 681
P
Sbjct: 133 P 133
>UniRef50_UPI00015C63F8 Cluster: hypothetical protein
CKO_pCKO3p06146; n=1; Citrobacter koseri ATCC
BAA-895|Rep: hypothetical protein CKO_pCKO3p06146 -
Citrobacter koseri ATCC BAA-895
Length = 125
Score = 82.6 bits (195), Expect = 1e-14
Identities = 49/87 (56%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Frame = +2
Query: 611 IKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRG--AFS*LTLVGISVRCRSFAPSWA 784
+KI VS LP ALSCS+PA RIPV PF G A S + GIS RCRSFAPSWA
Sbjct: 32 LKIITVSDESLPLALSCSNPAVSRIPV--PPFSLAGSVALSHSSHSGISARCRSFAPSWA 89
Query: 785 VCTNPPFSPTAAXLSGNYRLESTRXXT 865
V NPPFSPTAA L TR T
Sbjct: 90 VSKNPPFSPTAAPYPVTVHLSPTRKST 116
>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
organisms|Rep: Predicted protein - Nematostella
vectensis
Length = 97
Score = 75.8 bits (178), Expect = 1e-12
Identities = 34/40 (85%), Positives = 35/40 (87%)
Frame = +1
Query: 550 PXTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 669
P TSITK DAQ+ GGETRQDYKDTRRFPL APSCALLF P
Sbjct: 58 PLTSITKSDAQISGGETRQDYKDTRRFPLAAPSCALLFLP 97
>UniRef50_UPI00015C640B Cluster: hypothetical protein
CKO_pCKO2p07168; n=1; Citrobacter koseri ATCC
BAA-895|Rep: hypothetical protein CKO_pCKO2p07168 -
Citrobacter koseri ATCC BAA-895
Length = 99
Score = 65.7 bits (153), Expect = 1e-09
Identities = 42/91 (46%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Frame = -1
Query: 865 RXXPGGLKTIVTR*GRSGRAERGVRAHSPAWSERPTPN*DTYQREL*ESATLPEGRKADR 686
R PG + R GRS RAERGVRA+SPAWSERP P+ DT ++ P+G+KA++
Sbjct: 5 RVRPGWTQDDSYRKGRSSRAERGVRAYSPAWSERPKPSRDTSSVSYEKAPRFPKGKKAEQ 64
Query: 685 YPVSG-RVGTGERTRE-LPGGNAWYLYSPVG 599
VSG R G R E G + SPVG
Sbjct: 65 --VSGKRQGRNRRAHEGAAGEKSPASLSPVG 93
Score = 56.0 bits (129), Expect = 1e-06
Identities = 35/91 (38%), Positives = 41/91 (45%)
Frame = -3
Query: 854 GWTQDDSYQIRXQRSG*TGGSCTQPSLERTTYTELRYLPA*AMRKRHASRREKGGQVSGK 675
GWTQDDSY+ G P+ + + +K QVSGK
Sbjct: 9 GWTQDDSYRKGRSSRAERGVRAYSPAWSERPKPSRDTSSVSYEKAPRFPKGKKAEQVSGK 68
Query: 674 RQGRNRRAHEGASRGKRLVSL*SCRVSPPLT 582
RQGRNRRAHEGA+ K SL PPLT
Sbjct: 69 RQGRNRRAHEGAAGEKSPASLSPVGFRPPLT 99
>UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 37
Score = 62.9 bits (146), Expect = 1e-08
Identities = 29/30 (96%), Positives = 30/30 (100%)
Frame = +3
Query: 648 VRSPVPTLPLTGYLSAFLPSGSVALSHSSR 737
+RSPVPTLPLTGYLSAFLPSGSVALSHSSR
Sbjct: 1 MRSPVPTLPLTGYLSAFLPSGSVALSHSSR 30
>UniRef50_P03845 Cluster: Putative uncharacterized protein 1; n=4;
Bacteria|Rep: Putative uncharacterized protein 1 -
Escherichia coli
Length = 42
Score = 56.8 bits (131), Expect = 7e-07
Identities = 27/38 (71%), Positives = 28/38 (73%)
Frame = -1
Query: 865 RXXPGGLKTIVTR*GRSGRAERGVRAHSPAWSERPTPN 752
R PG + R RSGRAERGVRAHSPAWSERPTPN
Sbjct: 5 RALPGWTQDDSYRIRRSGRAERGVRAHSPAWSERPTPN 42
>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
Myxococcus xanthus
Length = 486
Score = 55.6 bits (128), Expect = 2e-06
Identities = 31/54 (57%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +1
Query: 295 CINESANARGEAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQG 453
CI + A AR EAV VL ALPL RS TRC RS GCG + R YG PQ QG
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQG 319
>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
root|Rep: Putative uncharacterized protein - Escherichia
coli
Length = 61
Score = 50.8 bits (116), Expect = 4e-05
Identities = 33/56 (58%), Positives = 34/56 (60%)
Frame = -2
Query: 549 GRSLMEKRQQRGLFTVPGLLLAFCSHVLSCVITLILWITVLPPLSELIPLAAAERP 382
G MEKR + L V LL CS L LILWITVLPPLSEL PLAA ERP
Sbjct: 5 GAEPMEKRLRCWLLPVLCFLLT-CSFRL---YPLILWITVLPPLSELTPLAAVERP 56
>UniRef50_P03846 Cluster: Putative uncharacterized protein 1; n=2;
cellular organisms|Rep: Putative uncharacterized protein
1 - Escherichia coli
Length = 47
Score = 50.4 bits (115), Expect = 6e-05
Identities = 25/41 (60%), Positives = 28/41 (68%)
Frame = -1
Query: 865 RXXPGGLKTIVTR*GRSGRAERGVRAHSPAWSERPTPN*DT 743
R PG + R RS RAERGV A+SPAWSERPTP+ DT
Sbjct: 5 RAFPGWTQVNSYRIRRSSRAERGVLAYSPAWSERPTPSRDT 45
>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
Beggiatoa sp. SS
Length = 114
Score = 46.8 bits (106), Expect = 7e-04
Identities = 21/41 (51%), Positives = 29/41 (70%)
Frame = +1
Query: 547 PPXTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 669
PP T+ITKI Q + +T+ +YK T FPL++PS +LLF P
Sbjct: 74 PPLTTITKIYPQFKNTQTQHNYKYTTPFPLQSPSYSLLFPP 114
>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
(SV40)
Length = 364
Score = 45.2 bits (102), Expect = 0.002
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +1
Query: 97 DPDMIRYIDEFGQTTTRMQ 153
DPDMIRYIDEFGQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364
>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
Magnoliophyta|Rep: Putative reverse transcriptase -
Zingiber officinale (Ginger)
Length = 49
Score = 44.0 bits (99), Expect = 0.005
Identities = 23/41 (56%), Positives = 27/41 (65%)
Frame = +2
Query: 221 INKLTTTIAFILCFRFRVEVWEVFSALMNRPTRGERRFAYW 343
+++LT L RF V V +ALMNRPTRGERRFAYW
Sbjct: 1 MSELTHINCVALTARFPVGKPVVPAALMNRPTRGERRFAYW 41
>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
Enterobacteriaceae|Rep: Lactose operon repressor -
Escherichia coli (strain K12)
Length = 360
Score = 39.9 bits (89), Expect = 0.082
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -3
Query: 365 ERGSGRAPNTQTASPRALADSLMQ 294
+R + APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348
>UniRef50_A3N6N0 Cluster: Putative uncharacterized protein; n=4;
Burkholderia|Rep: Putative uncharacterized protein -
Burkholderia pseudomallei (strain 668)
Length = 755
Score = 34.7 bits (76), Expect = 3.1
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = -3
Query: 728 MRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKR 624
+R+R A RR GG+ G+R+GRNR+ + RG+R
Sbjct: 355 VRRRAAPRRRHGGEWRGRRRGRNRKRRQ--QRGQR 387
>UniRef50_Q2K0C2 Cluster: Hypothetical conserved protein; n=2;
Rhizobium|Rep: Hypothetical conserved protein -
Rhizobium etli (strain CFN 42 / ATCC 51251)
Length = 653
Score = 34.3 bits (75), Expect = 4.1
Identities = 25/78 (32%), Positives = 37/78 (47%)
Frame = +2
Query: 545 RPPXRASQKSTLKSEVAKPDRTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRGAF 724
+PP K +K EVAK I+ P +P + +A + P Y+I L+P G+ A
Sbjct: 216 KPPAAPKPKPAVKPEVAKKPEVIEKPKPAPKPVEQA-TTQPPKKYKIVTNLAP-GQELAA 273
Query: 725 S*LTLVGISVRCRSFAPS 778
L L+G + S PS
Sbjct: 274 DELQLLGPADTTASTRPS 291
>UniRef50_A3S1G4 Cluster: Putative uncharacterized protein; n=1;
Prochlorococcus marinus str. MIT 9211|Rep: Putative
uncharacterized protein - Prochlorococcus marinus str.
MIT 9211
Length = 101
Score = 33.9 bits (74), Expect = 5.4
Identities = 15/56 (26%), Positives = 32/56 (57%)
Frame = +2
Query: 479 QKASKRPGTVKRPRCWRFSIRLRPPXRASQKSTLKSEVAKPDRTIKIPGVSPWKLP 646
+K S+ ++P +++ + +AS ST+++ +K D ++IPGV +K+P
Sbjct: 5 KKVSEGEAKSQKPDSLDRNVKSKKSAKASSNSTVEANASKEDVLLRIPGVLEYKVP 60
>UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1;
Methanocorpusculum labreanum Z|Rep: Putative
uncharacterized protein - Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z)
Length = 109
Score = 33.9 bits (74), Expect = 5.4
Identities = 21/55 (38%), Positives = 28/55 (50%)
Frame = -2
Query: 255 KMNAIVVVNLFIAAYNGYK*SNSITNFTNKAFFSLHSSCGLSKLINVSYHVWIQL 91
+MNA V + FIAA + +T + AFF L S G ++VSY VW L
Sbjct: 27 RMNAWVDLAAFIAAV-----ATCVTGYVLWAFFPLGSGRGAMNFLDVSYQVWYDL 76
>UniRef50_Q9HHM4 Cluster: Vng6323h; n=1; Halobacterium
salinarum|Rep: Vng6323h - Halobacterium salinarium
(Halobacterium halobium)
Length = 334
Score = 33.5 bits (73), Expect = 7.1
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = -2
Query: 816 AVGLNGGFVHTAQLGANDLHRTEIPTSVSYEKAPRFPKGERRTGIR*AAGSEQES 652
A+ +NG + QLGA+DL IP S + +GE +R AGS E+
Sbjct: 30 AITVNGNATGSTQLGADDLTAGTIPASADTLAVAQINRGEPPEPVRAVAGSVAEA 84
>UniRef50_A5CM45 Cluster: Putative xylosidase, glycosyl hydrolase
family 43; n=1; Clavibacter michiganensis subsp.
michiganensis NCPPB 382|Rep: Putative xylosidase,
glycosyl hydrolase family 43 - Clavibacter michiganensis
subsp. michiganensis (strain NCPPB 382)
Length = 533
Score = 33.1 bits (72), Expect = 9.4
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = -1
Query: 814 GRAERGVRAHSPAWSERPTPN*DTYQREL*ESATLPEGRKADRYPVSGR 668
G RA S+ PTP+ + +REL E A LP G ++ R PV G+
Sbjct: 297 GHVREMERAPISMLSDAPTPDAPSVERELFEGAGLPPGWRSLRGPVRGQ 345
>UniRef50_A4Q8I4 Cluster: MobA protein; n=1; Listonella anguillarum
serovar O2|Rep: MobA protein - Listonella anguillarum
serovar O2
Length = 548
Score = 33.1 bits (72), Expect = 9.4
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -2
Query: 210 NGYK*SNSITNFTNKAFFSLHSSCG-LSKLINVSYHVWIQLTLXKGRSAAAVPTI 49
NG+K N + + L++ CG L +L+ + + + LT+ +GR A P++
Sbjct: 488 NGFKAGNGVERAVTNDYDELNAKCGHLDRLLRETDPIGLTLTMEQGRKADPTPSV 542
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 855,220,368
Number of Sequences: 1657284
Number of extensions: 17736536
Number of successful extensions: 51137
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 48268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51074
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 77472727479
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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