Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_M06
         (871 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0049 - 20277234-20277251,20277670-20277795,20278085-202781...    29   6.4  
12_02_0634 + 21416205-21416954                                         28   8.5  
12_02_0160 + 14585559-14586230                                         28   8.5  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.5  
06_03_0218 + 18219956-18220555                                         28   8.5  
03_06_0149 - 31987183-31987630,31987813-31987874                       28   8.5  
03_04_0061 - 16949038-16950006                                         28   8.5  

>03_05_0049 -
           20277234-20277251,20277670-20277795,20278085-20278153,
           20278233-20278280,20278413-20278494,20278583-20278662,
           20278764-20278835,20278912-20279006,20280396-20280477,
           20280604-20280963
          Length = 343

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = +2

Query: 419 KGGNTVIHRIRVITQERTCEQKASKRPGTVKRPRCWRFSIRLRPPXRASQKSTLKSEVAK 598
           K    + +++  + +  T +Q A +    +   R WR  +R+RP  R S KS ++  + +
Sbjct: 249 KSDALISNKLHALIEYETSQQ-ADRAVDKLNDERNWRKGLRVRPVLRRSPKSAMR--LKR 305

Query: 599 PD 604
           PD
Sbjct: 306 PD 307


>12_02_0634 + 21416205-21416954
          Length = 249

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = -3

Query: 749 RYLPA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKR 624
           R  PA   R R   RR  GG  +G+R+GR   A     R  R
Sbjct: 111 RRRPALRGRGRGGRRRRSGGDATGRRRGRVSGAFPAKRRADR 152


>12_02_0160 + 14585559-14586230
          Length = 223

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +3

Query: 459 RRKEHVSKRPAKGQEP*KGRVAGVF--PSGSAPLXEHHKNRRSSQRWR 596
           RR+  V +RPA  +    G   GV   P G     E  + RR  QRWR
Sbjct: 27  RRRVEVVRRPALLRGRRGGAATGVAASPRGGGVAAETARRRRRRQRWR 74


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 301 NESAN---ARGEAVCVLGALPLPRSLTRCAR 384
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>06_03_0218 + 18219956-18220555
          Length = 199

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -3

Query: 710 SRREKGGQVSG--KRQGRNRRAHEGASRGKRLVS 615
           +RRE+  + +G  KR+GR R    G  RGKR  S
Sbjct: 106 ARRERRLEAAGAEKREGRRRGGSSGGLRGKRRAS 139


>03_06_0149 - 31987183-31987630,31987813-31987874
          Length = 169

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 731 AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRG 630
           A+ + H   R +   +  +R+GR R AHEG   G
Sbjct: 76  AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIG 109


>03_04_0061 - 16949038-16950006
          Length = 322

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 605 RTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRGA 721
           RT+K PG+   ++PRA+  + P  Y   VR +   +R A
Sbjct: 255 RTMKGPGLGGARVPRAVFRASPRRYYAAVRTARKARRSA 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,280,464
Number of Sequences: 37544
Number of extensions: 536596
Number of successful extensions: 1704
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1704
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)