Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_M05
         (925 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    38   0.003
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.30 
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    29   0.93 
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    29   0.93 

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 37.5 bits (83), Expect = 0.003
 Identities = 22/58 (37%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
 Frame = +1

Query: 388 GGXAXXXGXGXGPPPGX-XXGGGGXLXGXPPXGPGXXGRXXGXXGXPPPXGGXGGXPG 558
           GG     G   GPPPG    GG G   G      G  G   G  G     GG GG PG
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPG 245



 Score = 36.7 bits (81), Expect = 0.005
 Identities = 21/49 (42%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +1

Query: 433 GXXXGGGGXLXGXPPXGPGXXGRXXGXXGXPPPXGGXGG-XPGPGEXXG 576
           G   GG G   G PP GPG  G   G  G     GG GG   GPG   G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEG 235



 Score = 36.7 bits (81), Expect = 0.005
 Identities = 26/65 (40%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
 Frame = +1

Query: 382 GXGGXAXXXGX--GXGPPPGXXXGGGGXLXGXPPXGPGXXGRXXGXXGXPPP--XGGXGG 549
           G GG     G   G G  PG   GG G   G    GPG  G   G  G  P    GG GG
Sbjct: 212 GFGGEGHHHGGHGGFGGGPGGFEGGPGGFGG----GPGGFGGGLGGFGGGPGGFGGGPGG 267

Query: 550 XPGPG 564
             GPG
Sbjct: 268 HGGPG 272


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 15/45 (33%), Positives = 15/45 (33%)
 Frame = +2

Query: 398 PXXRVKXPAXPPXXXXXXXXXXXGPPPXXPGXXAGXXGXXXPPPP 532
           P   V  PA  P           GPPP  P       G   PPPP
Sbjct: 737 PAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 15/39 (38%), Positives = 15/39 (38%)
 Frame = +1

Query: 448 GGGXLXGXPPXGPGXXGRXXGXXGXPPPXGGXGGXPGPG 564
           G G   G  P G     R  G    PPP G   G P PG
Sbjct: 105 GRGIPLGQAPVGLAGPVRGVGYTAPPPPAGFGRGAPPPG 143


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +1

Query: 409 GXGXGPPPGXXXGGGGXLXGXPPXGPG 489
           G    PPPG   G G    G P  GPG
Sbjct: 72  GNAAPPPPGAEGGPGAGFGGFPGAGPG 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,290,838
Number of Sequences: 5004
Number of extensions: 16148
Number of successful extensions: 48
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)