Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_M04
(876 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 301 6e-83
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 295 4e-81
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 151 1e-37
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 119 5e-28
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 27 3.5
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.1
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 26 8.1
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 8.1
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 301 bits (740), Expect = 6e-83
Identities = 133/197 (67%), Positives = 161/197 (81%)
Frame = +2
Query: 227 CLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYR 406
CLEHGIQP+G M + D F+TFFSETG GK+VPR+++VDLEP V+D+VRTG YR
Sbjct: 25 CLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGKYVPRSIYVDLEPNVIDQVRTGPYR 84
Query: 407 QLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXX 586
LFHPEQLITGKEDA+NNYARGHYT+GKE+VD V D+IR++AD C+GLQGFL+FH
Sbjct: 85 DLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKIRRIADNCSGLQGFLVFHSFGGG 144
Query: 587 XXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHXDCAFMV 766
LL+ERL+++Y KKSKL+F++YPAPQVST+VVEPYNS+LTTH TL+ DC FMV
Sbjct: 145 TGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMV 204
Query: 767 DNEAIYDICRRNLDIER 817
DNE+ YDICRRNLDIER
Sbjct: 205 DNESCYDICRRNLDIER 221
Score = 52.0 bits (119), Expect = 1e-07
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = +1
Query: 154 MRECISVHVGQAGVQIGNACWELY 225
MRE IS+HVGQAG QIGNACWELY
Sbjct: 1 MREIISIHVGQAGTQIGNACWELY 24
Score = 33.9 bits (74), Expect = 0.031
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +1
Query: 817 PTYTNLNRLIGXIVSSITAS 876
P+Y NLNRLI +VSSITAS
Sbjct: 222 PSYENLNRLIAQVVSSITAS 241
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 295 bits (725), Expect = 4e-81
Identities = 135/205 (65%), Positives = 165/205 (80%), Gaps = 5/205 (2%)
Frame = +2
Query: 227 CLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVR 391
CLEHGI PDG PT+ K +D F TFFSETG GK VPR+++VDLEP V+D+VR
Sbjct: 25 CLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSETGQGKFVPRSIYVDLEPNVIDQVR 83
Query: 392 TGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFH 571
TG Y+ LFHPEQ++TGKEDA+NNYARGHYT+GKE++D VL+RIR++AD C+GLQGFL+FH
Sbjct: 84 TGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERIRRMADNCSGLQGFLVFH 143
Query: 572 XXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHXD 751
LL+ERL+++YGKKS L+F++YPAPQVST+VVEPYNS+LTTH TL++ D
Sbjct: 144 SFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSD 203
Query: 752 CAFMVDNEAIYDICRRNLDIERXPT 826
C FMVDNEA YDICRRNLDIER PT
Sbjct: 204 CTFMVDNEACYDICRRNLDIER-PT 227
Score = 54.4 bits (125), Expect = 2e-08
Identities = 27/44 (61%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Frame = +1
Query: 154 MRECISVHVGQAGVQIGNACWELY-LPGARHPA*WPDAHRQDHR 282
MRE ISVHVGQAGVQIGNACWELY L P +P + + H+
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHK 44
Score = 35.5 bits (78), Expect = 0.010
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = +1
Query: 817 PTYTNLNRLIGXIVSSITAS 876
PTY NLNRLI +VSSITAS
Sbjct: 226 PTYENLNRLIAQVVSSITAS 245
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 151 bits (366), Expect = 1e-37
Identities = 75/194 (38%), Positives = 109/194 (56%)
Frame = +2
Query: 233 EHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQL 412
EHG+ G T + N +F+E GK+VPRAV VDLEP +D V++G + L
Sbjct: 27 EHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGKYVPRAVLVDLEPGTMDAVKSGKFGNL 84
Query: 413 FHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXX 592
F P+ +I G+ A N +A+GHYT G E+ D VLD +R+ A+ C LQGF + H
Sbjct: 85 FRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRREAEACDALQGFQLTHSLGGGTG 144
Query: 593 XXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHXDCAFMVDN 772
LL+ ++ +Y + F++ PAP+ S VVEPYN+ L+ H +E+ D F +DN
Sbjct: 145 SGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDN 204
Query: 773 EAIYDICRRNLDIE 814
EA+ I L I+
Sbjct: 205 EALSSIFANTLKIK 218
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 154 MRECISVHVGQAGVQIGNACW 216
MRE + + GQ G Q+G A W
Sbjct: 1 MREIVHIQAGQCGNQVGAAFW 21
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 119 bits (287), Expect = 5e-28
Identities = 70/203 (34%), Positives = 109/203 (53%), Gaps = 3/203 (1%)
Frame = +2
Query: 227 CLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYR 406
CLEHGI PDG + + T G D + FF ++ +++PRA+ +DLEP VV+ + + TY
Sbjct: 26 CLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRYIPRAILIDLEPRVVNNILSDTYG 83
Query: 407 QLFHPEQLITGKE--DAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXX 580
L++PE ++ K A NN+A G Y+ + I + ++D I + AD L+GF + H
Sbjct: 84 SLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDMIDREADGSDSLEGFSLLHSIA 142
Query: 581 XXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQ-VSTAVVEPYNSILTTHTTLEHXDCA 757
L+ERL+ Y KK ++++P Q VS VV+PYNS+L + D
Sbjct: 143 GGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSV 202
Query: 758 FMVDNEAIYDICRRNLDIERXPT 826
++DN A+ I L + PT
Sbjct: 203 VVLDNAALAHIAADRLHTQN-PT 224
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 144 SFFLCLNVELNYNQSSFSSDLVKWL 70
S ++ LN L QSSF S +KWL
Sbjct: 565 SLYILLNENLFVGQSSFKSVFLKWL 589
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3
Query: 225 LAWSTASSLMARCPQTRPSGVETILSTLSSARPELAST 338
L ST SSL + ++PS T ST SSA P S+
Sbjct: 170 LTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSS 207
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -1
Query: 189 GLANVYRDALTHFDLSFFLCLNVELNYNQSSFSSDLVKWLAK 64
GL+ V + TH L + +E + FSSD +++ A+
Sbjct: 506 GLSRVPFEPYTHTQLEIIIAARLEAVRDDDVFSSDAIRFAAR 547
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +1
Query: 253 WPDAHRQDHRGWRRFFQHFLQR 318
W A R D R R FQHFLQR
Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,470,241
Number of Sequences: 5004
Number of extensions: 71948
Number of successful extensions: 196
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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