Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_M03
         (937 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0223 - 15986763-15987575                                         32   0.75 
06_03_0223 - 18391177-18391287,18391570-18392081,18392200-183930...    32   0.75 
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968...    30   2.3  
10_08_0017 - 14144042-14144614,14144727-14145059                       29   4.0  
07_03_1136 + 24218601-24218734,24218769-24219906                       29   5.3  
06_02_0363 - 15172528-15173224,15174564-15174856                       29   5.3  
08_01_0080 + 566509-566746,566904-567151,567347-567532,567639-56...    29   7.0  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   9.3  

>10_08_0223 - 15986763-15987575
          Length = 270

 Score = 31.9 bits (69), Expect = 0.75
 Identities = 45/168 (26%), Positives = 55/168 (32%), Gaps = 19/168 (11%)
 Frame = -1

Query: 925 GGXG-GXKCXCXPGXGNSXTDS----NRDKGXNRXGXGTGGXGXXXXXNFGAXRXXTRXX 761
           GG G G       G G S  DS    N  +G    G G GG G       G+        
Sbjct: 51  GGWGSGSGAGAGAGYGESGGDSGNTWNYGRGGGAGGGGGGGGGTNGGYGSGSGSGYGMGS 110

Query: 760 DTXTGVSYGGKAPTAXPXXEK---GREQGGQYP*AAGSEQESARGSFQGETPG------- 611
            +  G      AP A         G  +GG      GS   S  G+  G   G       
Sbjct: 111 GSSGGSGSSASAPVALSSGGNYATGDGEGGGGGGGGGSNGGSGYGAGAGVGQGAGESGSS 170

Query: 610 IFIVLSGFATSDLSVDFCDARQGAGA----YGKTPATRPFYGSWPFAG 479
           I +  S  +  D +  + DA  G G     +G  PA  P YG    AG
Sbjct: 171 IAMAPSPSSGGDYNGGYADAAGGGGGGGGGHGGGPAASPSYGVGAGAG 218


>06_03_0223 -
           18391177-18391287,18391570-18392081,18392200-18393019,
           18393603-18393671,18393973-18394062,18395381-18395575
          Length = 598

 Score = 31.9 bits (69), Expect = 0.75
 Identities = 14/22 (63%), Positives = 14/22 (63%)
 Frame = +3

Query: 627 WKLPRALSCSDPAAYGYCPPCS 692
           W   RA SCSDPAA G  PP S
Sbjct: 2   WLATRASSCSDPAAAGLVPPKS 23


>06_03_0833 -
           25196091-25196372,25196464-25196565,25196640-25196838,
           25196978-25197278,25197471-25197645,25197842-25198012,
           25198207-25198239
          Length = 420

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = +2

Query: 515 CWRFSIGSGPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 661
           CWR  +        T  D Q    +    +KD    P + PSC L+F P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIP 331


>10_08_0017 - 14144042-14144614,14144727-14145059
          Length = 301

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 928 AGGXGGXKCXCXPGXGNSXTDSNRD 854
           AGG G  +C C  G G+S  D + D
Sbjct: 74  AGGHGARRCNCFHGGGSSDDDDDED 98


>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = -1

Query: 934 PXAGGXGGXKCXCXPGXGNSXTDSNRDKGXNRXGXGTGGXG 812
           P  GG GG      PG G       R  G    G G GG G
Sbjct: 172 PPGGGGGGGGPGRAPGGGGGGGGPGRAPGGGGGGGGLGGGG 212


>06_02_0363 - 15172528-15173224,15174564-15174856
          Length = 329

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 615 GVSPWKLPRALSCSDPAAYGYC-PPCSRPFSXXGXAVGAFPP*LT 746
           G SP  LPR  + + P   G+C P C          +GA PP L+
Sbjct: 214 GASPPLLPRRSTPTSPRTQGFCLPRCPGVLCRPATDLGASPPSLS 258


>08_01_0080 +
           566509-566746,566904-567151,567347-567532,567639-567734,
           567836-567907,567990-568106,570531-571676
          Length = 700

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
 Frame = -1

Query: 742 SYGGKAPTAXPXXEKGREQGG--QYP*AAGSEQESARGSFQGETPGIFIVLSGFATSDLS 569
           +YG  AP      ++G +QGG  QYP     + + A G    +    +    G+  +   
Sbjct: 561 TYGQSAPAGPGYAQQGAQQGGYAQYP-----QSQPAYGDQAAQNNANY----GYQGAPAD 611

Query: 568 VDFCDARQGAGAYGKTPAT-RPFYGSWPFAG 479
            ++ +A   AG YG TPA+ +  Y + P AG
Sbjct: 612 PNYGNAYPQAG-YGSTPASGQAGYAAAPAAG 641


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 295 NESAN---ARGEAVCVLGALPLPRSLTRCAR 378
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,534,787
Number of Sequences: 37544
Number of extensions: 566098
Number of successful extensions: 1692
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1688
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2682675460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)