Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_M03
         (937 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80215-14|CAI79138.1|  662|Caenorhabditis elegans Hypothetical p...    29   3.6  
Z80215-13|CAI79137.1|  640|Caenorhabditis elegans Hypothetical p...    29   3.6  
Z80215-12|CAB02277.1|  652|Caenorhabditis elegans Hypothetical p...    29   3.6  
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr...    29   6.3  
AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.     28   8.3  
AC025722-6|AAO12398.1|  310|Caenorhabditis elegans Uncoordinated...    28   8.3  
AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated...    28   8.3  
AC006729-6|AAF60464.1|  282|Caenorhabditis elegans Hypothetical ...    28   8.3  

>Z80215-14|CAI79138.1|  662|Caenorhabditis elegans Hypothetical
           protein C36B1.12c protein.
          Length = 662

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 525 KRQQRGLFTVPGLLLAFCSHVLSCV-IPLILWITVL 421
           +RQ      +  + +A C HVL C+ +P + WI++L
Sbjct: 390 RRQPYAFILLDVINMALCMHVLKCLRLPSLKWISIL 425


>Z80215-13|CAI79137.1|  640|Caenorhabditis elegans Hypothetical
           protein C36B1.12b protein.
          Length = 640

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 525 KRQQRGLFTVPGLLLAFCSHVLSCV-IPLILWITVL 421
           +RQ      +  + +A C HVL C+ +P + WI++L
Sbjct: 390 RRQPYAFILLDVINMALCMHVLKCLRLPSLKWISIL 425


>Z80215-12|CAB02277.1|  652|Caenorhabditis elegans Hypothetical
           protein C36B1.12a protein.
          Length = 652

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 525 KRQQRGLFTVPGLLLAFCSHVLSCV-IPLILWITVL 421
           +RQ      +  + +A C HVL C+ +P + WI++L
Sbjct: 390 RRQPYAFILLDVINMALCMHVLKCLRLPSLKWISIL 425


>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical
           protein R08B4.1b protein.
          Length = 1160

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -1

Query: 928 AGGXGGXKCXCXPGXGNSXTDSNRDKGXNRXGXGTGGXG 812
           +GG GG       G G   ++SN   G    G G GG G
Sbjct: 797 SGGGGGGGGGGSGGSGGGGSNSNSGGGGGNGGGGNGGGG 835


>AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.
          Length = 468

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 628 GSSLVRSPVPTLPLTDTVRLAPALSPXXGKRLAP 729
           GSS+  +P P +PLT  +  AP   P     +AP
Sbjct: 194 GSSIPHAPPPPVPLTSNIPQAPPAPPPPIGGIAP 227


>AC025722-6|AAO12398.1|  310|Caenorhabditis elegans Uncoordinated
           protein 34, isoform b protein.
          Length = 310

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 628 GSSLVRSPVPTLPLTDTVRLAPALSPXXGKRLAP 729
           GSS+  +P P +PLT  +  AP   P     +AP
Sbjct: 180 GSSIPHAPPPPVPLTSNIPQAPPAPPPPIGGIAP 213


>AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated
           protein 34, isoform a protein.
          Length = 454

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 628 GSSLVRSPVPTLPLTDTVRLAPALSPXXGKRLAP 729
           GSS+  +P P +PLT  +  AP   P     +AP
Sbjct: 180 GSSIPHAPPPPVPLTSNIPQAPPAPPPPIGGIAP 213


>AC006729-6|AAF60464.1|  282|Caenorhabditis elegans Hypothetical
           protein Y24D9A.5 protein.
          Length = 282

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 416 GGNTVIHRIRGITQERTCEQKASKRPGTVK 505
           GG +V +R   + Q+++   ++SKRPG ++
Sbjct: 167 GGKSVFYRFTNLIQKKSFSVRSSKRPGILQ 196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,049,268
Number of Sequences: 27780
Number of extensions: 402730
Number of successful extensions: 1065
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2412704140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)