Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_M01
         (895 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P92162 Cluster: Cyclin B homolog; n=2; Obtectomera|Rep:...   252   7e-66

>UniRef50_P92162 Cluster: Cyclin B homolog; n=2; Obtectomera|Rep:
           Cyclin B homolog - Bombyx mori (Silk moth)
          Length = 525

 Score =  252 bits (618), Expect = 7e-66
 Identities = 126/130 (96%), Positives = 126/130 (96%)
 Frame = +3

Query: 261 MEIQLRRHRSAQIQDQENLYAGVRGKGNGAVPTKRLGLTVRGALGDLNTNVQVQREALGK 440
           MEIQLRRHRSAQIQDQENLYAGVRGKGNGAVPTKRLGLTVRGALGDLNTNVQVQREALGK
Sbjct: 1   MEIQLRRHRSAQIQDQENLYAGVRGKGNGAVPTKRLGLTVRGALGDLNTNVQVQREALGK 60

Query: 441 VAVTTAEFEKKATLNRGVVRSNYSHVTSKVDTGLAVKNVIQPSLRPPLRREESTAGLTAR 620
           VAVTTAEFEKKATLNRGVVRSNYSHVTSKVDTGLAVKNVIQPS RPPLRREESTAGLTAR
Sbjct: 61  VAVTTAEFEKKATLNRGVVRSNYSHVTSKVDTGLAVKNVIQPSSRPPLRREESTAGLTAR 120

Query: 621 AVTRTRGRFK 650
           AVTRTR   K
Sbjct: 121 AVTRTRVALK 130



 Score = 69.3 bits (162), Expect = 1e-10
 Identities = 40/82 (48%), Positives = 46/82 (56%)
 Frame = +1

Query: 640 VALKDNQNKPXEIKESINIYIQXXXXXXXXXXXLPMLKGX*XIKXHPNXXLKDGXDSLRK 819
           VALKDNQNKP EIKESINIYIQ           LPMLK    ++   +  LKDG DSLRK
Sbjct: 127 VALKDNQNKPNEIKESINIYIQTKKCQDTKKTKLPMLKENKELRTSKS-HLKDGTDSLRK 185

Query: 820 XKXXIKXPNRXIRKVXTXXXIP 885
            K  +K P   + K+      P
Sbjct: 186 TKLALKDPIESLGKLKLAETYP 207


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 698,737,863
Number of Sequences: 1657284
Number of extensions: 12922900
Number of successful extensions: 26147
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 25477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26143
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 80751996367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)