Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_M01
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    28   1.6  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    26   8.3  

>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -1

Query: 667 ACSDYLLKRPLVRVTALAVNPAVLSSRRSGGLKDG*ITFLTANPVSTFDV 518
           A S+   K P V  T  + NPA++S+  S   K+     +  NP STFD+
Sbjct: 85  APSELTSKNPTVSSTTSSANPAIVSNGGSPFYKN---PVVANNPSSTFDM 131


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 461 FSSCNGNFAESFALNLYICVQI 396
           FS+C+GN ++  A NLY  + I
Sbjct: 514 FSACDGNLSDEKAKNLYSSILI 535


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,971,700
Number of Sequences: 5004
Number of extensions: 57717
Number of successful extensions: 118
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)