Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_M01
         (895 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81458-3|CAB03823.2|  487|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AF251126-1|AAF71273.1|  487|Caenorhabditis elegans UDP-GlcNAc:a-...    30   1.9  
U58753-1|AAC24437.2|  814|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily a...    29   3.4  

>Z81458-3|CAB03823.2|  487|Caenorhabditis elegans Hypothetical
           protein C03E10.4 protein.
          Length = 487

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
 Frame = +2

Query: 68  CPMNFTRSKIQTTNLLHWEN--------IGEITKIKHRWTVKAVKLFE 187
           CP    R K Q TN  +W +        + ++T+IKH W  K   +F+
Sbjct: 203 CPEKMKRDKAQETNCSNWSSPDKYGNYRVAQLTQIKHHWWWKMNFVFD 250


>AF251126-1|AAF71273.1|  487|Caenorhabditis elegans
           UDP-GlcNAc:a-6-D-mannoside
           b1,2-N-acetylglucosaminyltransferase II protein.
          Length = 487

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
 Frame = +2

Query: 68  CPMNFTRSKIQTTNLLHWEN--------IGEITKIKHRWTVKAVKLFE 187
           CP    R K Q TN  +W +        + ++T+IKH W  K   +F+
Sbjct: 203 CPEKMKRDKAQETNCSNWSSPDKYGNYRVAQLTQIKHHWWWKMNFVFD 250


>U58753-1|AAC24437.2|  814|Caenorhabditis elegans Hypothetical
           protein W03B1.2 protein.
          Length = 814

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 223 YSKTLLNVNKFTFKQFNCLYRPTMFYFSYFTNIF 122
           Y+KT++      + + +CL+R T+  F  FT IF
Sbjct: 547 YNKTVMEFFDMEYAEASCLFRSTIMPFVVFTYIF 580


>AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 168 protein.
          Length = 1347

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +3

Query: 204 FNKVFEY*VKTKNSDNITIMEIQLRRHRSAQI---QDQENLYAGVRGKGNGAVPT 359
           F  +F+Y      + N    E+Q R+H+  ++   QD +  Y G  G+  G VP+
Sbjct: 827 FVALFDYTAAMSPNPNAEFEELQFRKHQLIKVYGGQDIDGFYHGAIGQRVGLVPS 881


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,190,407
Number of Sequences: 27780
Number of extensions: 318619
Number of successful extensions: 605
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)