Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_L24
(988 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0173 - 1292164-1293036,1294063-1294098,1294195-1294334,129... 30 3.3
12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-25... 29 5.7
11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-23... 29 5.7
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 5.7
06_03_1057 + 27248249-27249001 29 7.5
02_05_0686 - 30900748-30902167,30903442-30904742 29 7.5
07_03_1136 + 24218601-24218734,24218769-24219906 28 10.0
04_04_0370 - 24751242-24751350,24751818-24751879,24752028-247521... 28 10.0
>12_01_0173 -
1292164-1293036,1294063-1294098,1294195-1294334,
1295592-1295748,1295862-1296035,1296146-1296396,
1299446-1299590
Length = 591
Score = 29.9 bits (64), Expect = 3.3
Identities = 22/77 (28%), Positives = 23/77 (29%)
Frame = +1
Query: 220 GGXXGPXXXKXLGGXGPPPPXXXGKKXXFWXNXGXLGFFGPPXXXXKXIXPPPXXXFFFP 399
GG P G PPPP F N G + GP PPP P
Sbjct: 467 GGTQPPTQANQAAGSFPPPPPPLPLMPQFVQNTGGMFGMGPFGMVSGSAPPPP------P 520
Query: 400 XPGGGXXXFXXXKXPPP 450
P F PPP
Sbjct: 521 LPNIMSAGFPRLSVPPP 537
>12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-250315,
250429-250556,250764-250862,250953-251061,251301-251380,
251464-251691,251768-251833,251970-252086,252538-252735,
252847-252963,253056-253115,253228-253314,253419-253502,
253623-253757,253837-253899,253979-254083,254174-254286,
254374-254626,254715-254851,254970-255248,255352-256354,
256450-256935,257023-257193,257285-257470,257820-257942,
258024-258134,258225-258395
Length = 1708
Score = 29.1 bits (62), Expect = 5.7
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 201 PGXPPLGGXXGPPXXKXPWGXWAPPP 278
PG PP+GG PP P + PP
Sbjct: 1679 PGMPPMGGMGMPPMGPGPMPAYGMPP 1704
>11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-234912,
235048-235175,235383-235481,235572-235680,235920-235999,
236083-236310,236387-236452,236589-236705,237142-237339,
237451-237567,237660-237719,237832-237918,238023-238106,
238233-238367,238446-238508,238588-238692,238781-238893,
238981-239233,239322-239458,239577-239855,239958-240960,
241054-241539,241627-241797,241890-242075,242426-242548,
242630-242740,242834-243004
Length = 1708
Score = 29.1 bits (62), Expect = 5.7
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 201 PGXPPLGGXXGPPXXKXPWGXWAPPP 278
PG PP+GG PP P + PP
Sbjct: 1679 PGMPPMGGMGMPPMGPGPMPAYGMPP 1704
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.1 bits (62), Expect = 5.7
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Frame = +3
Query: 201 PGXPPLGGXXGPPXXKXPWG--XWAPPPXXGG 290
P PP+GG GPP P G PPP G
Sbjct: 1149 PPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHG 1180
Score = 28.3 bits (60), Expect = 10.0
Identities = 29/105 (27%), Positives = 29/105 (27%)
Frame = -3
Query: 569 PXXPPWGGGXXXPPPKARXXXXXXXXXGXGXXXXTPXPXGGGGFXXXXKXXXPPPGXGKK 390
P P GG PPP G TP P GG PPP G
Sbjct: 1139 PPLPEGIGGVPPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGV-----APPPPPPRGH- 1192
Query: 389 KXXXGGGXXXFXXXKGGPKXPRXPXFXQKXXFFPXXXGGGGPXPP 255
GG G P P P P G G P PP
Sbjct: 1193 -----GGVGGPPTPPGAPAPPMPPGVPGGPP--PPPGGRGLPAPP 1230
>06_03_1057 + 27248249-27249001
Length = 250
Score = 28.7 bits (61), Expect = 7.5
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +3
Query: 195 PGPGXPPLGGXXGPPXXKXPWGXWAPPPXXGGEKXXFLGKXGXPWXFW 338
P G PPLG P P+G + P G + G+ G P W
Sbjct: 190 PRAGLPPLG----VPADSYPYGYYVPQQQVPGAGIAYGGQQGHPGYLW 233
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 28.7 bits (61), Expect = 7.5
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +3
Query: 195 PGPGXPPLGGXXGPPXXKXPWGXWAPPPXXGGEK 296
P G PP GPP P G PPP G K
Sbjct: 340 PPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGK 373
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 28.3 bits (60), Expect = 10.0
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 986 PPXXGGGGGGPXXXGXGKTPXPGG 915
PP GGGGGGP G+ P GG
Sbjct: 172 PPGGGGGGGGP-----GRAPGGGG 190
>04_04_0370 -
24751242-24751350,24751818-24751879,24752028-24752110,
24752359-24752473,24753703-24753768,24753875-24753974,
24754477-24754682
Length = 246
Score = 28.3 bits (60), Expect = 10.0
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -3
Query: 971 GGGGGPXXXGXGKTPXPGG 915
GGGGG G G P PGG
Sbjct: 22 GGGGGGDGGGGGANPSPGG 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,873,239
Number of Sequences: 37544
Number of extensions: 514605
Number of successful extensions: 2907
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2576
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2881826040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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