Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_L23
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    39   0.001
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   3.6  
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su...    27   3.6  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    27   4.7  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    27   4.7  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    26   8.3  

>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 5/128 (3%)
 Frame = +1

Query: 361 YVRTFFKHFRKCNLTSYVLFDGSYETRKLKTAYHRLRSKIYGASCLDPVTQGCMQIFPLL 540
           Y    F  +   N     +FDG     K +   +R + KI            C+ I   +
Sbjct: 77  YHNDLFLTYSLSNAYREYIFDGGLPFSKHQVRVNRYQQKINDLR--SAYINLCVPIAQHV 134

Query: 541 IRNVFKEALIDIGVAYTVCEFEADDEIAAMARHLNCPVLSYDSDFYIYNV-----LYIPF 705
           +  + K  +I       VC  EAD   A  A+ L+  +LS DSDF +Y++      YIP 
Sbjct: 135 LMGLAKAKVI-------VCNEEADKYCAFQAKKLDAVILSQDSDFLLYDIDTPHYGYIPL 187

Query: 706 NTVDLNRN 729
            ++D+  N
Sbjct: 188 QSLDVTSN 195


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 22/85 (25%), Positives = 40/85 (47%)
 Frame = +1

Query: 115 NVYLQIYNNSNRFNLIITSKLPSRXGVRGLTTYINKNEDIFLKDFVLYDSCVVIDGHSLC 294
           +VY  I++  ++ + + TSK+  R  +R    +I +   ++ K F++    VVI      
Sbjct: 313 SVYKDIFDLFSQRSFLATSKIYRRLCLRDFYKFIKRVAFLYHK-FMIPSDHVVISQELQD 371

Query: 295 AQLYQRLNSFSAFGGDYDKFFQYVR 369
           A   + ++ F AF    D F   VR
Sbjct: 372 AVFKEAIDMFGAFIPSRDGFDLVVR 396


>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
           subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 364 VRTFFKHFRKCNLTSYVLFDGSYETRKLKTAYHRLRSK 477
           + TFF + RKCN+    L   +YE   +  A     S+
Sbjct: 143 LETFFSYLRKCNMWDLKLQAKAYEYESIDDALKNFESQ 180


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = -2

Query: 573  INQSLFENITYEQGEDLHASLSNW-I*A*RSIYLGSQ--SMICSFKFSSL 433
            +    FE+  YE  + +++S+SNW + A   +YLG    ++ C+ K +S+
Sbjct: 1197 VGDECFESKNYEAAKLMYSSISNWSMLATTLVYLGEYQGAVDCARKANSI 1246


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 92  FFSFLQIQTFTCKYTTTVTDLI*LLHQNYLPXWEYE 199
           F+S  Q ++FT  Y   +T+ +   H+NY+   E E
Sbjct: 335 FYSEEQRKSFTPMYEDIITEQVLTAHENYIKQLEAE 370


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -3

Query: 833  VVXFLFDSFKAIS*LFKSVYFTI*DMFLSTIYYNTFRFKSTVLNGIYKTLYI 678
            VV  +FD F +   LF+  Y  +  +   + ++N  RF S + NG Y +L +
Sbjct: 1014 VVIGIFDQFVSAGQLFQ--YPQLYQLGQRSEFFNLKRFWSWITNGFYHSLLL 1063


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,265,145
Number of Sequences: 5004
Number of extensions: 65616
Number of successful extensions: 179
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)