Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_L22
         (926 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    53   9e-06
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    45   0.002
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    41   0.039
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    33   7.8  

>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 53.2 bits (122), Expect = 9e-06
 Identities = 22/29 (75%), Positives = 25/29 (86%)
 Frame = +1

Query: 676 VCXLGALPLPRSLTRCARSFGCGERYQLT 762
           +C  G +PLPRSLTR ARSFGCGERY+LT
Sbjct: 30  ICDTGDIPLPRSLTRYARSFGCGERYRLT 58


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 45.2 bits (102), Expect = 0.002
 Identities = 22/35 (62%), Positives = 23/35 (65%)
 Frame = +1

Query: 640 CINESAXARGXAVCXLGALPLPRSLTRCARSFGCG 744
           CI + A AR  AV  L ALPL RS TRC RS GCG
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCG 300


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 41.1 bits (92), Expect = 0.039
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +2

Query: 443 DPDMIRYIDKFGQTTTXMQ 499
           DPDMIRYID+FGQTTT MQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 33.5 bits (73), Expect = 7.8
 Identities = 16/24 (66%), Positives = 18/24 (75%)
 Frame = -1

Query: 710 ERGSGRAPNXQTAXPRAXADSLMQ 639
           +R +  APN QTA PRA ADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 656,121,648
Number of Sequences: 1657284
Number of extensions: 10575937
Number of successful extensions: 25638
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25633
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 85260991088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)