Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_L19
         (878 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0418 + 25077748-25078101,25079413-25079538,25080683-250815...    31   1.2  
02_03_0320 + 17677809-17677929,17678203-17678289,17678657-176787...    29   3.7  
03_01_0084 + 676538-676669,677828-677959,678085-678210,678820-67...    29   6.5  
01_03_0304 - 14838977-14838988,14839291-14840302,14840414-148406...    29   6.5  
11_01_0409 - 3096372-3097052,3097324-3098652                           28   8.6  
07_01_0985 - 8297560-8297610,8297728-8297939,8298327-8298449,829...    28   8.6  

>04_04_0418 +
           25077748-25078101,25079413-25079538,25080683-25081593,
           25081970-25082453
          Length = 624

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 541 GMVFEIISNKMVPWLVLTDGNGHVEKGFKSEWAAM 645
           G+V  +++N++ PWL+L  G+     GF + W A+
Sbjct: 74  GLVPGVLANRLPPWLILLIGSACALLGFGTLWLAV 108


>02_03_0320 +
           17677809-17677929,17678203-17678289,17678657-17678763,
           17679903-17679981,17680574-17680754,17681290-17681411,
           17681541-17681677
          Length = 277

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -1

Query: 683 SLPID---PMYRISSFIAAHSDLKPFST*PLPSVNTNHGTILLD 561
           SLP+D   P    +S   AH ++KPFS  PLP   T +  +LL+
Sbjct: 73  SLPVDFPKPSDNENSVEVAHPNIKPFSVHPLPL--TKNSDVLLE 114


>03_01_0084 +
           676538-676669,677828-677959,678085-678210,678820-678882,
           678964-679061,679133-679340,679859-679930,680016-680108,
           680297-680398,680568-680665,681059-681140,681274-681362,
           681960-682065,682145-682210,682527-682633,682907-683027,
           683226-683411,683490-683789,683887-683967,684061-684225,
           684297-684383,684476-684601,684750-684830,684917-684988,
           685353-685364
          Length = 934

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
 Frame = +1

Query: 475 RGMELSELIVYDGRLLTFDDRSGMVFEIISNKMVPWLVLTDGNG------HVEKGFKSEW 636
           +G+E ++  V D  L T +D+S  V  I++ +    ++ +  +G      H++ G K+EW
Sbjct: 702 QGLETNQSPVGDLALATLEDQSNSVQPIVNVEEKFHILCSKDSGVLYEDPHIQIGLKAEW 761

Query: 637 AAMKDE-ILYIGS 672
            A     +L++G+
Sbjct: 762 RAHHGRLVLFLGN 774


>01_03_0304 -
           14838977-14838988,14839291-14840302,14840414-14840609,
           14840795-14841149
          Length = 524

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
 Frame = +1

Query: 277 AGDYITFRIGIVADLDTNSKSSTKAYSFHSYLKKGHLVYNR-VKNSVTVTWDSQQPTLLT 453
           AG Y   R       D   +  T     +  L   H  +NR + N +TV W       + 
Sbjct: 137 AGGYSCTRCPHGTSFDPAERKCTSTKQHNIVLGISH--FNRSLFNKITVKWKRGIQKKIR 194

Query: 454 SMYSHKGRGMELSELIVYD 510
             Y HK +G+ L +LI  D
Sbjct: 195 RDYFHKNKGLLLEQLISCD 213


>11_01_0409 - 3096372-3097052,3097324-3098652
          Length = 669

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 373 KKGHLVYNRVKNSVTVTWDSQQPTLLTSMY 462
           K+G +VYN  +   TV  DSQ+  +LT  Y
Sbjct: 423 KRGQIVYNHHQGHHTVIHDSQRNLVLTGPY 452


>07_01_0985 -
           8297560-8297610,8297728-8297939,8298327-8298449,
           8298763-8298817,8299940-8300077,8300187-8300261,
           8300339-8300398,8301335-8301392,8301948-8302054,
           8302484-8302558,8302643-8302838,8304222-8304301,
           8308887-8309757,8310672-8310679
          Length = 702

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 18/71 (25%), Positives = 29/71 (40%)
 Frame = +1

Query: 484 ELSELIVYDGRLLTFDDRSGMVFEIISNKMVPWLVLTDGNGHVEKGFKSEWAAMKDEILY 663
           E+ +L    GR+    +   +VF + +N  +      D        F   WA M ++I  
Sbjct: 357 EMLDLFFVRGRVSKRREEDDLVFFVNNNMKMHGHGFNDNMEDPPPFFVRRWAPMLEKISN 416

Query: 664 IGSMGKEWTTS 696
           I S G +W  S
Sbjct: 417 INSAGVDWERS 427


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,781,949
Number of Sequences: 37544
Number of extensions: 433219
Number of successful extensions: 909
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)