Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_L18
         (929 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    27   3.8  
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po...    27   5.0  
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    26   8.7  

>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 125  RYLYDKYKCLFQGLWMYIKYMYVYNKNLTFISXYL 229
            +YLY KY     G     K  YV NK+L++I   L
Sbjct: 1136 QYLYKKYPNATSGELTDYKSFYVCNKSLSYIGFVL 1170


>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 80  WSLHKGAAGSNPAKGRYLYDKYKCLFQGLWMY-IKYMY 190
           + LH+ AA    A+G  LY     L +G+  Y + YMY
Sbjct: 62  YQLHRAAAPKYDARGSLLYVGQDLLQEGVTSYMVDYMY 99


>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 176 IKYMYVYNKNLTFISXYLVPVT 241
           + + + YNK + F + YLVP+T
Sbjct: 11  VPFAHCYNKRVIFRANYLVPLT 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,238,958
Number of Sequences: 5004
Number of extensions: 32447
Number of successful extensions: 64
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)