Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_L18
         (929 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58736-1|AAB00598.1|  302|Caenorhabditis elegans Dumpy : shorter...    31   1.2  
U55376-1|AAA98003.1|  434|Caenorhabditis elegans Hypothetical pr...    31   1.6  
U80451-8|AAB37842.2|  288|Caenorhabditis elegans Collagen protei...    29   4.7  
AL032634-3|CAE45092.1|  412|Caenorhabditis elegans Hypothetical ...    29   6.3  

>U58736-1|AAB00598.1|  302|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 3 protein.
          Length = 302

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 25/91 (27%), Positives = 26/91 (28%), Gaps = 5/91 (5%)
 Frame = +1

Query: 649 PXPPGKXGLVFXXXXXXXXXKPXXPGPSGXGXXVSPPPXGGKXGXXHKXG-----GKPXE 813
           P  PG+ G             P  PGP G      PP   GK G   K G     G P E
Sbjct: 203 PGVPGEKGPTGEPGKVINGAPPGPPGPPGPPGPQGPPGPPGKDGQPGKAGPPGLPGDPGE 262

Query: 814 KXXXTXRXXKXAXKPXKXXXLXGXFPXXPPP 906
           K             P       G     PPP
Sbjct: 263 KGSDGLPGPHGGTGPRGPPGQPGSCDHCPPP 293


>U55376-1|AAA98003.1|  434|Caenorhabditis elegans Hypothetical
           protein F16H11.3 protein.
          Length = 434

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +3

Query: 78  HGHYTRGLRVRIPPREDICMINI--NVFSRXYGCILNICMCIIKILHLFPVI 227
           H H+ +G+ +R     D    +I    F+  YG + N+  C    L +FPV+
Sbjct: 227 HYHHQKGMEIREKAETDRPSPSILWTTFTNCYGQLFNVWFCFAVTLTIFPVM 278


>U80451-8|AAB37842.2|  288|Caenorhabditis elegans Collagen protein
           20 protein.
          Length = 288

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 721 PGPSGXGXXVSPPPXGGKXGXXHKXGG 801
           PGP+G G    PP  GG  G   + GG
Sbjct: 170 PGPAGRGGPRGPPGPGGPQGEAGEDGG 196


>AL032634-3|CAE45092.1|  412|Caenorhabditis elegans Hypothetical
           protein Y39G8C.4 protein.
          Length = 412

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 721 PGPSGXGXXVSPPPXGGKXGXXHKXGGKP 807
           PGP G    V PP   G+ G  H+ GG P
Sbjct: 215 PGPPGPPGPVGPPGDSGERGNIHE-GGPP 242


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,666,414
Number of Sequences: 27780
Number of extensions: 246149
Number of successful extensions: 829
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)