Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_L17
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    27   2.8  
SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces p...    27   3.7  
SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi...    26   6.5  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    26   8.6  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   8.6  
SPAC23C11.17 |||mitochondrial inner membrane protein involved in...    26   8.6  

>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 26/78 (33%), Positives = 32/78 (41%)
 Frame = -3

Query: 469 MCLRLSGTIKVSTGLLDTPPNKKQSLQRSLRKVSRSRYPYLAIGMCSPIILR*SLNNERR 290
           M LR S   KVS  L     N  +S + SL K S +    +A G     I     N  + 
Sbjct: 714 MTLRESFEAKVSRILNQARDNAGRSAEHSL-KDSNNVKQMVAAGSKGSFI-----NISQM 767

Query: 289 STCVGLDTTRDRRTPFNF 236
           S CVG      +R PF F
Sbjct: 768 SACVGQQIVEGKRIPFGF 785


>SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 208

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
 Frame = +3

Query: 567 IAKKETEMNPNTKPKAAATKNVENTVEKK-----MVELKLTDNTDSADST 701
           + ++  E+N N+KP     + +E+TV  K     + +LKLT++T  A S+
Sbjct: 96  LKRENKEVNANSKPPVKQQEVIESTVISKSQSPSVKQLKLTESTLLAPSS 145


>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 615

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 216 IMGEDLQKLKGVLRSLVVSSPTQVD-LRSLLRDYRSMMGEHIPIAKYGYRDLLTFLKERC 392
           ++ + LQ+ + + +S+  +  + +D L+SL  DY S+ G  +  A    + +   L E C
Sbjct: 84  VLQKGLQECQNLNKSVSQNLKSVMDILKSLAEDYTSLEGSPLQFASKSQQKVEMMLSEGC 143


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -3

Query: 484 LTNLS-MCLRLSGTIKVSTGLLDTPPNKKQSLQRSL 380
           +T LS MC R  G    S G+ D  P K  S Q+ +
Sbjct: 674 ITRLSKMCARFLGNRGFSIGIEDVQPGKSLSSQKEI 709


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +3

Query: 552 IVNTFIAKKETEMNPNTKPKAAATKNVENTVEKKM-VELKLTDNTDSA-DSTPQHRV 716
           ++N    K+ETE +P+T+      +   N  E  +  E   T  +++A +STP+  V
Sbjct: 418 VINNSTPKEETEESPSTELPETGKEQPPNKAEPAVPTEASSTKPSEAAEESTPRFSV 474


>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
           potassium ion transport|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 567 IAKKETEMNPNTKPKAAATKNVENTVEK 650
           +AKK+TE N  T   A + K+ E+ + K
Sbjct: 454 LAKKQTEENKATSKPAVSAKSPESNIPK 481


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,524,618
Number of Sequences: 5004
Number of extensions: 74946
Number of successful extensions: 221
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)