Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_L17
         (915 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0820 - 7957563-7957646,7958036-7958134,7958233-7959729           36   0.034
06_01_0107 - 854756-854883,855126-856968                               31   1.7  
11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495     29   3.9  
01_06_0369 - 28794283-28794427,28794865-28795874                       29   3.9  
05_04_0048 - 17493775-17494431,17494506-17494801,17494851-174949...    29   5.2  
08_01_0404 - 3590296-3590409,3590529-3590819,3592414-3592461,359...    28   9.0  
04_04_0483 - 25554531-25554605,25554681-25555644,25555722-255558...    28   9.0  

>08_01_0820 - 7957563-7957646,7958036-7958134,7958233-7959729
          Length = 559

 Score = 36.3 bits (80), Expect = 0.034
 Identities = 24/72 (33%), Positives = 36/72 (50%)
 Frame = +3

Query: 228 DLQKLKGVLRSLVVSSPTQVDLRSLLRDYRSMMGEHIPIAKYGYRDLLTFLKERCSDCFL 407
           DLQ LKG L  L   S   V L  +  +Y  + G H+ +++YG   L+  L E+ +D F+
Sbjct: 311 DLQGLKGQLLRLFELSGGSVPLVRVPSEYLKLFGRHLYVSEYGAVKLI-HLFEKLADSFV 369

Query: 408 FGGVSSNPVLTL 443
             G     V+ L
Sbjct: 370 VIGKGHRKVICL 381


>06_01_0107 - 854756-854883,855126-856968
          Length = 656

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +3

Query: 366 LLTFLKERCSDCFLFGGVSSNPVLTLIVPDNLKHIDKFVRKQKAPTNVRVKG 521
           LL +L  R +DCFLF G +   +    + ++  H D ++    A + + V+G
Sbjct: 176 LLAYLSPRRTDCFLFAGHADGSIAAHRLIESSPHGDDWLTLAAASSRLLVRG 227


>11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495
          Length = 1086

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = -3

Query: 526 LLPFTLTLVGAFCFLTNLSMCLRLSGTIKVSTGLLDTPPNKKQSLQRSLRKVSRSRY 356
           LLP    +VGAF F   + + +++    K+S+ ++D   N+  S Q  +R      Y
Sbjct: 746 LLPAITIVVGAFAFSLYVVIRMKVKKHQKISSSMVDMISNRLLSYQELVRATDNFSY 802


>01_06_0369 - 28794283-28794427,28794865-28795874
          Length = 384

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = -3

Query: 535 TLCLLPFTLTLVGAFCFLTNLSMCLRLSGTIK 440
           T+CLL  TL +  AF FLT+L M  R   T K
Sbjct: 283 TVCLLVSTLAVAKAFLFLTDLRMDRRNRKTTK 314


>05_04_0048 -
           17493775-17494431,17494506-17494801,17494851-17494958,
           17495463-17495544,17495561-17495740
          Length = 440

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 17/67 (25%), Positives = 34/67 (50%)
 Frame = -3

Query: 472 SMCLRLSGTIKVSTGLLDTPPNKKQSLQRSLRKVSRSRYPYLAIGMCSPIILR*SLNNER 293
           S+ +R+  +      +LD PPN   SL++S+++++        + +  P+    SL+  R
Sbjct: 300 SLAMRMGASFARLGTILDPPPNAADSLEKSIKQMT------ALVSLLGPVSHSHSLSLAR 353

Query: 292 RSTCVGL 272
            S  VG+
Sbjct: 354 SSLTVGI 360


>08_01_0404 -
           3590296-3590409,3590529-3590819,3592414-3592461,
           3592559-3592795,3593668-3593704,3594311-3594627
          Length = 347

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +3

Query: 444 IVPDNLKHIDKFVRK-QKAPTNVRVKGKRQSV 536
           + PD ++H+ KF+R+ +   T  R+K  RQS+
Sbjct: 251 LYPDFIRHLSKFIREMENITTKTRLKKIRQSL 282


>04_04_0483 -
           25554531-25554605,25554681-25555644,25555722-25555847,
           25556162-25556331,25556431-25556526
          Length = 476

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
 Frame = +3

Query: 570 AKKETEMNPNTKPKAAATKNVENTVEKKM-VELKLTDNTDSADSTPQHRVSTQDSTICS 743
           AKK  + N N+ PK  AT   EN+++K++ V+  L+    S+D++   +V  Q  + CS
Sbjct: 319 AKKSNKENVNSVPKVGATP--ENSIKKEVSVDASLSTWLVSSDNSTVDKV--QSGSPCS 373


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,258,284
Number of Sequences: 37544
Number of extensions: 459064
Number of successful extensions: 1173
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)