Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_L17
(915 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92830-8|CAB07353.1| 537|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z82067-2|CAB63319.1| 167|Caenorhabditis elegans Hypothetical pr... 30 2.0
U50067-5|AAY86219.1| 306|Caenorhabditis elegans Hypothetical pr... 30 2.0
L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell l... 30 2.0
AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein. 30 2.0
AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical... 29 4.6
Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical pr... 29 6.1
Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical pr... 29 6.1
AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein. 29 6.1
AL132949-10|CAB61082.1| 721|Caenorhabditis elegans Hypothetical... 29 6.1
AF016437-1|AAB65884.2| 690|Caenorhabditis elegans Hypothetical ... 28 8.1
>Z92830-8|CAB07353.1| 537|Caenorhabditis elegans Hypothetical
protein F11A5.9 protein.
Length = 537
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -3
Query: 604 LVFGFISVSFLAMNVLTIKSFIGTLCLLPFTLTLVGAFC 488
L G +S+SFL + V+ + + LC+L F+ +++G C
Sbjct: 385 LALGGMSLSFLGLAVIPVSEPVLGLCMLIFSCSIIGFNC 423
>Z82067-2|CAB63319.1| 167|Caenorhabditis elegans Hypothetical
protein W03H9.2 protein.
Length = 167
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/64 (23%), Positives = 30/64 (46%)
Frame = +3
Query: 462 KHIDKFVRKQKAPTNVRVKGKRQSVPMNDLIVNTFIAKKETEMNPNTKPKAAATKNVENT 641
+ I K ++K +A ++ K + N++ + ++AKK T K K +E+
Sbjct: 94 ERIRKSIKKNEAARRAKIAEKNEERRQNEITFDKWVAKKSTLKKYGKWRKKQEAKKLESA 153
Query: 642 VEKK 653
EK+
Sbjct: 154 EEKR 157
>U50067-5|AAY86219.1| 306|Caenorhabditis elegans Hypothetical
protein C18F3.4 protein.
Length = 306
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +3
Query: 408 FGGVSSN--PVLTLIVPDNLKHIDKFVRKQKAPTNVRVKGKRQSVPMNDLIVNTFIAKKE 581
+GG S N P+ T + ++I + ++ PT ++ Q ++ + FIAK+
Sbjct: 193 YGGNSKNDSPLQTRMKGWQREYIKEVIKDSHYPTEEELRDIEQKCDLSRKQILRFIAKRL 252
Query: 582 TEMNPNTKPK 611
T NPN KP+
Sbjct: 253 T--NPNRKPR 260
>L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell
lineage protein 36 protein.
Length = 962
Score = 30.3 bits (65), Expect = 2.0
Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 12/113 (10%)
Frame = +3
Query: 483 RKQKAPTNVRVKGKRQSVPMNDLIV---NTFIA-KKETEMNPNTKPKAAATKNVENTVEK 650
+++KA + GK +NDL V F+ ++E E+N + A TK E++ +K
Sbjct: 410 KRKKAVRTLSFVGKEGGTSVNDLNVMQRQVFLQLRREAEINTKAEESAQGTKEQESS-QK 468
Query: 651 KMVELKLTDNTD-SADSTPQ-------HRVSTQDSTICSQDALRSFMRXRIPA 785
K E + D ++ ++ +PQ R +T+ +T + ++ + +PA
Sbjct: 469 KHAEEESDDVSELTSHQSPQAPMGSGERRKATRLATSATNSPIKKVAKHEVPA 521
>AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein.
Length = 962
Score = 30.3 bits (65), Expect = 2.0
Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 12/113 (10%)
Frame = +3
Query: 483 RKQKAPTNVRVKGKRQSVPMNDLIV---NTFIA-KKETEMNPNTKPKAAATKNVENTVEK 650
+++KA + GK +NDL V F+ ++E E+N + A TK E++ +K
Sbjct: 410 KRKKAVRTLSFVGKEGGTSVNDLNVMQRQVFLQLRREAEINTKAEESAQGTKEQESS-QK 468
Query: 651 KMVELKLTDNTD-SADSTPQ-------HRVSTQDSTICSQDALRSFMRXRIPA 785
K E + D ++ ++ +PQ R +T+ +T + ++ + +PA
Sbjct: 469 KHAEEESDDVSELTSHQSPQAPMGSGERRKATRLATSATNSPIKKVAKHEVPA 521
>AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical
protein K07H8.10 protein.
Length = 798
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = +3
Query: 522 KRQSVPMNDLIVNTFIAKKETEMNPNTKPKAAATKNVENTVEKKMVELKLTDNTDSADST 701
K + +N+ +V+ F A+ + E + KPK AAT V+ + K+ D+++ S+
Sbjct: 695 KSNGLKVNNHLVDVFYARHQ-ETKVDVKPKKAATPAVQKKIVPKVAADSSGDDSEEVASS 753
Query: 702 PQ 707
+
Sbjct: 754 DE 755
>Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical
protein T10G3.5b protein.
Length = 1203
Score = 28.7 bits (61), Expect = 6.1
Identities = 18/105 (17%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Frame = +3
Query: 471 DKFVRKQKAPTNVRVKGKRQSVPMNDLIVNTFIAKKETEMNPNTKPKAAATKNVENTVEK 650
++FV +K R K +++ + D +VN+ + + + K K+ K
Sbjct: 586 ERFVEMEKEMEEERQKATDRTLKLKDALVNSEKNLETIKKESEDREKIVREKDAHLEENK 645
Query: 651 KMVE--LKLTDNTDSADSTPQHRVSTQDSTICSQDALRSFMRXRI 779
K +E ++ + + + VS++D+T+ ++++ S ++ ++
Sbjct: 646 KRIEDAVQKLEEAEKRARELEASVSSRDTTVSTKESELSELKGKL 690
>Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical
protein T10G3.5a protein.
Length = 1205
Score = 28.7 bits (61), Expect = 6.1
Identities = 18/105 (17%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Frame = +3
Query: 471 DKFVRKQKAPTNVRVKGKRQSVPMNDLIVNTFIAKKETEMNPNTKPKAAATKNVENTVEK 650
++FV +K R K +++ + D +VN+ + + + K K+ K
Sbjct: 588 ERFVEMEKEMEEERQKATDRTLKLKDALVNSEKNLETIKKESEDREKIVREKDAHLEENK 647
Query: 651 KMVE--LKLTDNTDSADSTPQHRVSTQDSTICSQDALRSFMRXRI 779
K +E ++ + + + VS++D+T+ ++++ S ++ ++
Sbjct: 648 KRIEDAVQKLEEAEKRARELEASVSSRDTTVSTKESELSELKGKL 692
>AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.
Length = 1205
Score = 28.7 bits (61), Expect = 6.1
Identities = 18/105 (17%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Frame = +3
Query: 471 DKFVRKQKAPTNVRVKGKRQSVPMNDLIVNTFIAKKETEMNPNTKPKAAATKNVENTVEK 650
++FV +K R K +++ + D +VN+ + + + K K+ K
Sbjct: 588 ERFVEMEKEMEEERQKATDRTLKLKDALVNSEKNLETIKKESEDREKIVREKDAHLEENK 647
Query: 651 KMVE--LKLTDNTDSADSTPQHRVSTQDSTICSQDALRSFMRXRI 779
K +E ++ + + + VS++D+T+ ++++ S ++ ++
Sbjct: 648 KRIEDAVQKLEEAEKRARELEASVSSRDTTVSTKESELSELKGKL 692
>AL132949-10|CAB61082.1| 721|Caenorhabditis elegans Hypothetical
protein Y53F4B.12 protein.
Length = 721
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = -3
Query: 568 MNVLTIKSFIGTLCLLPFTLTLVGAFCFLTNLSMCLRLSGTIKVSTGLLDTPPN 407
+++LT+ S I TLCLL +L +VG C ++ L++ L ++ + + P N
Sbjct: 160 VDLLTVLSAIITLCLLLCSLRVVGTIC-VSLLAVTLLIAASCTMVAFFHSDPEN 212
>AF016437-1|AAB65884.2| 690|Caenorhabditis elegans Hypothetical
protein F13H6.1 protein.
Length = 690
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +3
Query: 615 AATKNVENTVEKKMVELKLTDNT---DSADSTPQHRVSTQDSTICSQ 746
+ VE+TVE + ELK +D+ D ADS P+ + D +C +
Sbjct: 65 SGVSGVESTVEHDLSELKASDSPMSHDGADS-PRPELDRTDIVVCGE 110
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,574,285
Number of Sequences: 27780
Number of extensions: 428058
Number of successful extensions: 1218
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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