Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_L17
         (915 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    25   0.73 
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    25   0.96 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   2.2  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   5.1  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   6.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.9  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   8.9  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 25.4 bits (53), Expect = 0.73
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 501 TNVRVKGKRQSVPMNDLI 554
           +N R   KRQSVP NDL+
Sbjct: 394 SNYREMEKRQSVPANDLL 411


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 25.0 bits (52), Expect = 0.96
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 478 NLSMCLRLSGTIKVSTGLLDTPPNKKQSLQRSLRKV 371
           +LSM L    T ++S  +LD   N K+++ R L++V
Sbjct: 1   HLSMRLSNVATFRLSKVMLDHTINSKKTIMRILKEV 36


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 357 IHIWLLVCALPSYCGSPSIMSVGP 286
           + IW+ VC L  +  SPS  ++ P
Sbjct: 325 LSIWITVCVLNVHFRSPSTHNMSP 348


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -2

Query: 557 NYQVIHWHTLSFTFHSDIGGSLLLPNKFIDVFEIVRNYQSEHRV 426
           NY ++   T S T       S  +  K I VF + ++   EH V
Sbjct: 375 NYSLVPTTTASPTTEPSTTTSTTISQKHIKVFVVNKDILHEHNV 418


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -3

Query: 310 SLNNERRSTCVGLDTTRDRRTPFNF-*RSSPIIVSVDF 200
           ++N  +   CVG      +R PF F  R+ P  +  D+
Sbjct: 239 NINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDY 276


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 345  AKYGYRDLLTFLKERCSDCFLFGGVSSNPVLTLIVP 452
            A+  YR  L   +  CSD F  GGV  + +++  +P
Sbjct: 961  ARPAYRRRLNVNETVCSDYFSQGGVIESIMVSDYLP 996


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 540 MNDLIVNTFIAKKETEMNPNTK 605
           +NDLI+NT  A  + + N   K
Sbjct: 574 VNDLIMNTRCANSDNQNNNQNK 595


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,858
Number of Sequences: 438
Number of extensions: 5524
Number of successful extensions: 21
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)