Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_L16
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    82   1e-16
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem...    73   5e-14
SPCC1442.15c |cox18||mitochondrial inner membrane protein Cox18|...    28   2.0  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    27   2.7  

>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 81.8 bits (193), Expect = 1e-16
 Identities = 37/115 (32%), Positives = 61/115 (53%)
 Frame = +2

Query: 503 VPWWGAIVLGTIVVRVVMFPLVILSQRNSAQMNNNLPEIQLLQMKMTQARQTGNQIEAAR 682
           +PWW +I    + +R+ +FP+++   + SA++    P++      +++A+  GN     +
Sbjct: 113 LPWWASIAACAVAMRIAVFPIMLKMMKTSAKLAIINPKVAEHMSVLSKAKAEGNSELMMQ 172

Query: 683 YAQEMMLFMKXKGLNPLKNLIVPLAQTPLFISFFMGLRGMANCPVESMTHGGLWW 847
              ++    K   +NPL  L  P+ Q  LFISFF  L+ MA  PVE  T GG WW
Sbjct: 173 ATTQIQNLYKVNNVNPLNLLSAPVFQGILFISFFYALKTMAGVPVEGFTDGGFWW 227


>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
           membrane translocase Oxa101|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 72.9 bits (171), Expect = 5e-14
 Identities = 36/114 (31%), Positives = 63/114 (55%)
 Frame = +2

Query: 506 PWWGAIVLGTIVVRVVMFPLVILSQRNSAQMNNNLPEIQLLQMKMTQARQTGNQIEAARY 685
           PWW +I+L T+ VR+ + P++I S RNS +++   PE++     +  A+   +Q+   ++
Sbjct: 85  PWWVSIILTTLGVRLALTPVMIASFRNSTKLSVIQPEMKKELEAIKTAKLDNDQLALNQH 144

Query: 686 AQEMMLFMKXKGLNPLKNLIVPLAQTPLFISFFMGLRGMANCPVESMTHGGLWW 847
           +  +        +NP    I+PL Q+ +F SFF  +R M+   V+  T GGL W
Sbjct: 145 SIALRGIYLKHNVNPFAIFILPLTQSAVFFSFFYAIRKMSRLSVDGFTTGGLAW 198


>SPCC1442.15c |cox18||mitochondrial inner membrane protein
           Cox18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 202

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +2

Query: 725 NPLKNLIVPLAQTPLFISFFMGLRGMAN-CPVESMTHGGLWW 847
           +PL    +P+ Q PLF      LR   + CP    T G LW+
Sbjct: 78  HPLMIYALPITQLPLFAFASYQLRQAVDVCPESMSTEGMLWF 119


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
 Frame = -2

Query: 751 WNN*IFKRVQSFXFHEK----HHFLSISCSFNLISSLPGLCHF 635
           W     KR+ +F  H      +HFL+    F L S   GLC F
Sbjct: 88  WIRVFLKRIYTFFVHSARVFLYHFLNEEKEFTLASFFWGLCRF 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,549,254
Number of Sequences: 5004
Number of extensions: 71710
Number of successful extensions: 158
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)