Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_L16
(887 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0659 + 19647037-19647464,19647569-19647659,19648998-196490... 56 3e-08
03_01_0111 + 884501-884970,885069-885147,885530-885574,885838-88... 50 2e-06
03_06_0651 + 35297560-35297895,35298881-35298991,35299670-352997... 41 0.002
06_01_0501 - 3587390-3587528,3587922-3588031,3588122-3588187,358... 38 0.011
05_04_0091 + 17839118-17839303,17840876-17840923,17841381-178415... 29 4.9
03_01_0028 - 274231-275424 29 4.9
>10_08_0659 +
19647037-19647464,19647569-19647659,19648998-19649039,
19649179-19649237,19649559-19649634,19649735-19649866,
19650251-19650358,19651040-19651094,19651187-19651437
Length = 413
Score = 56.4 bits (130), Expect = 3e-08
Identities = 36/113 (31%), Positives = 58/113 (51%)
Frame = +2
Query: 509 WWGAIVLGTIVVRVVMFPLVILSQRNSAQMNNNLPEIQLLQMKMTQARQTGNQIEAARYA 688
WW I L T+++R PL++ + + ++N PE++ ++ +M A + E A
Sbjct: 143 WWACIALATVLIRSATVPLLVNQLKATQKLNAIRPEMEAIKEEM-NAMDPKSAKEGK--A 199
Query: 689 QEMMLFMKXKGLNPLKNLIVPLAQTPLFISFFMGLRGMANCPVESMTHGGLWW 847
+ LF K G++P L L Q P+F+SFF +R M + V SM GG W
Sbjct: 200 KMTALFQK-HGVSPFTPLKGLLIQGPIFMSFFFAIRNMID-KVPSMKGGGSLW 250
>03_01_0111 +
884501-884970,885069-885147,885530-885574,885838-885903,
886362-886420,886626-886701,886825-886956,887046-887153,
887679-887733,887822-888042
Length = 436
Score = 50.4 bits (115), Expect = 2e-06
Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 16/135 (11%)
Frame = +2
Query: 491 SL*XVPWWGAIVLGTIVVRVVMFPLVILSQRNSAQMNNNLPEIQLLQMKMTQARQTGNQI 670
SL + WW I L ++++R + PL +L+Q + M + I L ++ R GN+
Sbjct: 151 SLTGLNWWACIALTSLLIRTLTVPL-LLNQMKATAMRPEIEAINLEMRTISSTRIAGNEK 209
Query: 671 EAARYAQE--------MMLFMKXK--------GLNPLKNLIVPLAQTPLFISFFMGLRGM 802
+ R E ML K K G+ PL L Q P+F+SFF + M
Sbjct: 210 SSTRVTDEGSMSTDPQSMLEGKRKLGELFLRHGVTPLTPLKGLFIQAPIFMSFFFAISNM 269
Query: 803 ANCPVESMTHGGLWW 847
V S GG++W
Sbjct: 270 VE-KVPSFKGGGIYW 283
>03_06_0651 +
35297560-35297895,35298881-35298991,35299670-35299744,
35300165-35300225,35300406-35300479,35300564-35300668,
35301099-35301206,35301604-35301707,35302005-35302223,
35302505-35302646,35302694-35302825,35302962-35303066
Length = 523
Score = 40.7 bits (91), Expect = 0.002
Identities = 31/114 (27%), Positives = 50/114 (43%)
Frame = +2
Query: 506 PWWGAIVLGTIVVRVVMFPLVILSQRNSAQMNNNLPEIQLLQMKMTQARQTGNQIEAARY 685
P+ AI+L T++V+ FPL ++ M + P Q+K Q R G+Q R
Sbjct: 126 PYGFAIILLTVLVKAATFPLTKKQVESAIAMRSLQP-----QVKAIQERYAGDQ---ERI 177
Query: 686 AQEMMLFMKXKGLNPLKNLIVPLAQTPLFISFFMGLRGMANCPVESMTHGGLWW 847
E K ++PL + L P++I + L +AN E + G +W
Sbjct: 178 QLETARLYKLSDVDPLAGCLPTLVTIPVWIGLYRALSNVAN---EGLLTEGFFW 228
>06_01_0501 -
3587390-3587528,3587922-3588031,3588122-3588187,
3588293-3588410,3588499-3588554,3588647-3588766,
3588937-3589035,3589443-3589490,3589534-3589545,
3590353-3590418,3591412-3591471,3592061-3592162,
3592405-3592426,3592959-3593041,3593166-3593293,
3593775-3593881,3594376-3594845
Length = 601
Score = 37.9 bits (84), Expect = 0.011
Identities = 13/39 (33%), Positives = 26/39 (66%)
Frame = +2
Query: 503 VPWWGAIVLGTIVVRVVMFPLVILSQRNSAQMNNNLPEI 619
+PWW I L T+ +R+++ P++I + +A++ LPE+
Sbjct: 155 IPWWITISLSTVAMRLLILPVLITQIKKAAKIGKLLPEL 193
>05_04_0091 +
17839118-17839303,17840876-17840923,17841381-17841526,
17841616-17841664,17842260-17842316,17842460-17842627,
17842950-17843011,17843103-17843190,17843277-17843388,
17843472-17843548,17843622-17843759,17844424-17844588,
17844667-17844780,17845026-17845122,17845242-17845390
Length = 551
Score = 29.1 bits (62), Expect = 4.9
Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 4/116 (3%)
Frame = +1
Query: 181 GRRSAVMKLFCEKVEVRTPRIFYVYSSAG-SVRFASTLGSDAGKTLPLA-DSIXXXXXXX 354
G++ +LF +K + + F Y S+G + F + A P + S+
Sbjct: 265 GQKKLKGQLFVDKFQEKVQHTFLDYISSGFELNFMVAVDFTASNGDPRSPQSLHYIDPSG 324
Query: 355 XXTTISDAVSAVQSFAA--NGEPTFASIGLGGWGPVGLVQNCFEYLHVTLXCSMVG 516
+ A+ V + + F + G G P G + +CF T C +VG
Sbjct: 325 RPNSYQQAILGVGEVLQFYDNDRRFPAWGFGAKTPQGYISHCFNLNATTNDCEVVG 380
>03_01_0028 - 274231-275424
Length = 397
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +1
Query: 472 CFEYLHVTLXCSMVGCN-CLGHNSCQSCY 555
CF Y +T ++VG N C+ HNSC + Y
Sbjct: 215 CFTYPKITSY-AVVGSNICISHNSCNATY 242
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,319,522
Number of Sequences: 37544
Number of extensions: 449890
Number of successful extensions: 1053
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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