Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_L16
         (887 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   4.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   8.6  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   8.6  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +1

Query: 424 ASIGLGGWGPVGLVQ 468
           A++G+GG+G V LVQ
Sbjct: 371 ATLGVGGFGRVELVQ 385


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 654 CLACVIFICNNCISGR 607
           C+  V   C  CISGR
Sbjct: 290 CVNIVTSYCKTCISGR 305


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = +2

Query: 587 SAQMNNNLPEIQLL-QMKMTQARQTGNQIEAARYAQEMMLFMKXKGLNPLKNLIVPL 754
           SA+   N+  + L+    + +    G  IEA  Y +  MLF    G   + +   P+
Sbjct: 454 SAEREKNVSLLHLIFPPDIAKRLWLGETIEAKTYPEVTMLFSDIVGFTEICSTATPM 510


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,334
Number of Sequences: 438
Number of extensions: 5259
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)