Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_L15
(921 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 33 0.057
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.13
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.53
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.70
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.70
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 2.8
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 2.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.8
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 26 6.5
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 26 6.5
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 33.1 bits (72), Expect = 0.057
Identities = 22/58 (37%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Frame = -1
Query: 915 GGGGGFXXFXXGXXXXGXGGGFXGGGXPXXFXXXG-GGXPPXRGGXFFFXXXGGGGXG 745
GG GGF F G GGF GG G GG P GG G GG G
Sbjct: 205 GGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFG 262
Score = 30.3 bits (65), Expect = 0.40
Identities = 19/47 (40%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = -1
Query: 918 GGGGGGFXXFXXGXXXXGXGGGFXGGGXPXXFXXXG--GGXPPXRGG 784
GG GGG F G G G G GGG G GG P GG
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270
Score = 29.1 bits (62), Expect = 0.93
Identities = 26/79 (32%), Positives = 26/79 (32%), Gaps = 2/79 (2%)
Frame = -1
Query: 918 GGGGGGFXXFXXGXXXXGXGGGFXG-GGXPXXFXXXGGGXPPXRGGXFFFXXXGGG-GXG 745
GG GGG G G GGF G G GGG GG F GG G G
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGG 250
Query: 744 XKXTXXXXXFFXXXXGGPG 688
F GG G
Sbjct: 251 LGGFGGGPGGFGGGPGGHG 269
Score = 28.7 bits (61), Expect = 1.2
Identities = 26/78 (33%), Positives = 26/78 (33%), Gaps = 1/78 (1%)
Frame = -1
Query: 918 GGGGGGFXXFXXGXXXXGXG-GGFXGGGXPXXFXXXGGGXPPXRGGXFFFXXXGGGGXGX 742
GGG GGF G G GGF G G GG GG F GG G G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGG--FEGGPGGFGGGP 244
Query: 741 KXTXXXXXFFXXXXGGPG 688
F GG G
Sbjct: 245 GGFGGGLGGFGGGPGGFG 262
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = -1
Query: 855 GFXGGGXPXXFXXXGGGXPPXRGGXFFFXXXGGGG 751
G GGG F GG PP GG F GG G
Sbjct: 184 GHNGGGF-GGFGGGSGGPPPGPGGFGGFGGFGGEG 217
Score = 25.8 bits (54), Expect = 8.6
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -1
Query: 918 GGGGGGFXXFXXGXXXXGXGGGFXGGGXP 832
GG GGG F G G GGG G G P
Sbjct: 245 GGFGGGLGGFGGGPG--GFGGGPGGHGGP 271
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.9 bits (69), Expect = 0.13
Identities = 18/56 (32%), Positives = 18/56 (32%)
Frame = +1
Query: 751 PPPPXXXKKKXPPPXGGXPPPXXXKXXXXSPPXKTPPXPXXXXPPXKXXKXPPPPP 918
PPPP P P P PP PP PP PPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP----PPPPPPP 783
Score = 30.7 bits (66), Expect = 0.30
Identities = 18/48 (37%), Positives = 19/48 (39%)
Frame = +1
Query: 778 KXPPPXGGXPPPXXXKXXXXSPPXKTPPXPXXXXPPXKXXKXPPPPPG 921
K PPP PP +P PP P PP PPPPPG
Sbjct: 730 KSPPPP---PPAVIVPTPAPAPIPVPPPAPIMGGPPP-----PPPPPG 769
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.9 bits (64), Expect = 0.53
Identities = 16/53 (30%), Positives = 17/53 (32%)
Frame = +1
Query: 757 PPXXXKKKXPPPXGGXPPPXXXKXXXXSPPXKTPPXPXXXXPPXKXXKXPPPP 915
PP + PP PP PP PP P P PPPP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPP--------PPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/43 (30%), Positives = 13/43 (30%)
Frame = +1
Query: 754 PPPXXXKKKXPPPXGGXPPPXXXKXXXXSPPXKTPPXPXXXXP 882
PP PPP PPP P PP P P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Frame = +1
Query: 844 PXKTPPX-PXXXXPPXKXXKXPPPPP 918
P TPP P PP PPPPP
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPP 1711
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/40 (30%), Positives = 12/40 (30%)
Frame = +1
Query: 796 GGXPPPXXXKXXXXSPPXKTPPXPXXXXPPXKXXKXPPPP 915
GG P P PP PP PPPP
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPP 1718
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.5 bits (63), Expect = 0.70
Identities = 18/60 (30%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Frame = +1
Query: 751 PPPPXXXKKKXPP----PXGGXPPPXXXKXXXXSPPXKTPPXPXXXXPPXKXXKXPPPPP 918
P PP + PP P PPP P K PP P PP + PP
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPPI--PSKAPPIPSSLPPPAQPAAPVKSPP 185
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.70
Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 4/81 (4%)
Frame = +1
Query: 688 PGPPXXXXK-KXXXGXGXFXXXPPPPXXXKKKXPPPXGGXPPPXXXKXXXXSPPXKTPPX 864
P PP + K G G PPP + G P P + PP ++ P
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAA--GSIPLPPQGRSAPPPPPPRSAPS 371
Query: 865 PXXXXPP---XKXXKXPPPPP 918
PP + PP PP
Sbjct: 372 TGRQPPPLSSSRAVSNPPAPP 392
Score = 29.1 bits (62), Expect = 0.93
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Frame = +1
Query: 751 PPPPXXXKK-KXPPPXGGXPPPXXXKXXXXSPPXKTPPXPXXXXPPXKXXKXPPPPP 918
PPPP ++ + PP G PP ++ PP PPPPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNG--SSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/44 (31%), Positives = 16/44 (36%)
Frame = +1
Query: 751 PPPPXXXKKKXPPPXGGXPPPXXXKXXXXSPPXKTPPXPXXXXP 882
PPPP + P G PPP +PP P P P
Sbjct: 361 PPPPPP---RSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAP 401
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/58 (25%), Positives = 17/58 (29%)
Frame = +3
Query: 747 PXPPPXXXXXXXXXXXXXXXXXRXKXKXXGXPPXKNPPXALXFXPPXXXXKXPPPPPR 920
P PPP PP N ++ PP PPPPPR
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPL-PPQGRSAPPPPPPR 367
Score = 27.1 bits (57), Expect = 3.7
Identities = 16/56 (28%), Positives = 18/56 (32%)
Frame = +1
Query: 751 PPPPXXXKKKXPPPXGGXPPPXXXKXXXXSPPXKTPPXPXXXXPPXKXXKXPPPPP 918
P PP + P PP +PP TPP PP PP P
Sbjct: 389 PAPPPAIPGRSAPAL----PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLP 440
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +1
Query: 841 PPXKTPPXPXXXXPPXKXXKXPPPPPG 921
PP PP P PPPPPG
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.5 bits (58), Expect = 2.8
Identities = 19/58 (32%), Positives = 19/58 (32%)
Frame = -1
Query: 918 GGGGGGFXXFXXGXXXXGXGGGFXGGGXPXXFXXXGGGXPPXRGGXFFFXXXGGGGXG 745
GG GG F G G G G GG GG RGG GG G
Sbjct: 12 GGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKG 69
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/55 (29%), Positives = 17/55 (30%)
Frame = +1
Query: 754 PPPXXXKKKXPPPXGGXPPPXXXKXXXXSPPXKTPPXPXXXXPPXKXXKXPPPPP 918
P P P P G P P K +PP P P P PPP
Sbjct: 1143 PKPSVAAPPVPAPSGAPPVP---KPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPP 1194
Score = 26.2 bits (55), Expect = 6.5
Identities = 18/61 (29%), Positives = 19/61 (31%), Gaps = 6/61 (9%)
Frame = +1
Query: 754 PPPXXXKKKXPPPXGGXPPPXXXKXXXXSPPXKTP------PXPXXXXPPXKXXKXPPPP 915
P P P P G P P K +PP P P P PP PP
Sbjct: 1105 PKPSVAVPPVPAPSGAPPVP---KPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPV 1161
Query: 916 P 918
P
Sbjct: 1162 P 1162
Score = 25.8 bits (54), Expect = 8.6
Identities = 16/57 (28%), Positives = 16/57 (28%), Gaps = 3/57 (5%)
Frame = +1
Query: 754 PPPXXXKKKXPPPXGGXPPPXXXKXXXXSPPXKTP---PXPXXXXPPXKXXKXPPPP 915
P P PPP P P PP T P P PP PP
Sbjct: 1182 PKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 26.2 bits (55), Expect = 6.5
Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Frame = +1
Query: 757 PPXXXKKKXPPPXGGXP-PPXXXKXXXXSPPXKTPPXP 867
P KK PPP P P + PP PP P
Sbjct: 42 PAPVSKKPLPPPTRRLPRKPLPFRSTSLQPPSSQPPAP 79
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -1
Query: 918 GGGGGGFXXFXXGXXXXGXGGGFXGG 841
GG GGF G G GGF GG
Sbjct: 148 GGSRGGFGGNSRGGFGGGSRGGFGGG 173
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,810,603
Number of Sequences: 5004
Number of extensions: 27195
Number of successful extensions: 356
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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