Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_L14
         (898 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase su...    77   2e-14
D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase su...    77   2e-14
AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical...    77   2e-14
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    36   0.052
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    30   2.0  
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    30   2.0  
Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical pr...    30   2.6  
AL132862-5|CAB70227.1|  419|Caenorhabditis elegans Hypothetical ...    30   2.6  
AL132862-4|CAB60533.1|  420|Caenorhabditis elegans Hypothetical ...    30   2.6  
AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.     30   2.6  
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr...    29   6.0  
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr...    29   6.0  
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p...    29   6.0  
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p...    29   6.0  
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane...    29   6.0  

>D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 40/70 (57%), Positives = 43/70 (61%)
 Frame = +1

Query: 238 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 417
           A R   TT   KDIDSAAK+                    FG+L+IGYARNPSLKQQLFS
Sbjct: 6   AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65

Query: 418 YAILGFALSE 447
           YAILGFALSE
Sbjct: 66  YAILGFALSE 75


>D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 40/70 (57%), Positives = 43/70 (61%)
 Frame = +1

Query: 238 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 417
           A R   TT   KDIDSAAK+                    FG+L+IGYARNPSLKQQLFS
Sbjct: 6   AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65

Query: 418 YAILGFALSE 447
           YAILGFALSE
Sbjct: 66  YAILGFALSE 75


>AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.3 protein.
          Length = 116

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 40/70 (57%), Positives = 43/70 (61%)
 Frame = +1

Query: 238 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 417
           A R   TT   KDIDSAAK+                    FG+L+IGYARNPSLKQQLFS
Sbjct: 30  AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 89

Query: 418 YAILGFALSE 447
           YAILGFALSE
Sbjct: 90  YAILGFALSE 99


>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
            ZK783.1 protein.
          Length = 2585

 Score = 35.5 bits (78), Expect = 0.052
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 102  KCLSCRQTDRPCSQVCHLLQLCTGATTCSCTHPY-TDGTCC 221
            KC+S  +    CSQ C     C G TTC C   Y  +G CC
Sbjct: 2137 KCVSIHERASNCSQ-CDANAHCVGGTTCKCNPGYFGNGLCC 2176


>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
 Frame = -2

Query: 384  GIADDEGAEDCSNTSSGTSYSH-CRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSRYH 208
            G   D+  + CS  S G + S  C C       +    +    G  GP C E CR  RY 
Sbjct: 1534 GFQGDKCEQKCSEGSFGPACSQQCNCGKYKCDATDGKCICP-VGRHGPLCEEECRPGRY- 1591

Query: 207  LCMGGYSCKWSHQC 166
                G SC+   QC
Sbjct: 1592 ----GQSCQNKCQC 1601


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
 Frame = -2

Query: 384  GIADDEGAEDCSNTSSGTSYSH-CRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSRYH 208
            G   D+  + CS  S G + S  C C       +    +    G  GP C E CR  RY 
Sbjct: 1534 GFQGDKCEQKCSEGSFGPACSQQCNCGKYKCDATDGKCICP-VGRHGPLCEEECRPGRY- 1591

Query: 207  LCMGGYSCKWSHQC 166
                G SC+   QC
Sbjct: 1592 ----GQSCQNKCQC 1601


>Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical
           protein K04B12.1 protein.
          Length = 1764

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +3

Query: 99  TKCLSCRQTDRPCSQVCHLLQLCTGATTCSCTHPYTDGTCCP 224
           + C  C  +  P  Q CH  Q CT  T+  CT P T  + CP
Sbjct: 449 SSCTECLVSVDPLCQWCHPTQSCT--TSARCTSPVT--SQCP 486


>AL132862-5|CAB70227.1|  419|Caenorhabditis elegans Hypothetical
           protein Y73F8A.9 protein.
          Length = 419

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/56 (26%), Positives = 22/56 (39%)
 Frame = +3

Query: 75  CRAPHLIKTKCLSCRQTDRPCSQVCHLLQLCTGATTCSCTHPYTDGTCCPYTALCS 242
           C     ++  C SC+Q  +P    C         T+CSC  P    T    T+ C+
Sbjct: 29  CGCASQVQPSC-SCQQATQPQQYSCSCQNTAPVQTSCSCAQPVQQVTYQVQTSQCA 83


>AL132862-4|CAB60533.1|  420|Caenorhabditis elegans Hypothetical
           protein Y73F8A.8 protein.
          Length = 420

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/56 (26%), Positives = 22/56 (39%)
 Frame = +3

Query: 75  CRAPHLIKTKCLSCRQTDRPCSQVCHLLQLCTGATTCSCTHPYTDGTCCPYTALCS 242
           C     ++  C SC+Q  +P    C         T+CSC  P    T    T+ C+
Sbjct: 30  CGCASQVQPSC-SCQQATQPQQYSCSCQNTAPVQTSCSCAQPVQQVTYQVQTSQCA 84


>AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.
          Length = 1766

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +3

Query: 99  TKCLSCRQTDRPCSQVCHLLQLCTGATTCSCTHPYTDGTCCP 224
           + C  C  +  P  Q CH  Q CT  T+  CT P T  + CP
Sbjct: 451 SSCTECLVSVDPLCQWCHPTQSCT--TSARCTSPVT--SQCP 488


>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
            K08E5.3b protein.
          Length = 3183

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +3

Query: 135  CSQVCHLLQLCTGATTCSCTHPYTDGTCCPYTALCSAVLPD 257
            CS V H +    G T C C   Y DG       +C A+L D
Sbjct: 2755 CSGVAHCIDRAVGYT-CKCPDGYIDGNPDEPGRVCGALLCD 2794


>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
            K08E5.3a protein.
          Length = 3767

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +3

Query: 135  CSQVCHLLQLCTGATTCSCTHPYTDGTCCPYTALCSAVLPD 257
            CS V H +    G T C C   Y DG       +C A+L D
Sbjct: 3339 CSGVAHCIDRAVGYT-CKCPDGYIDGNPDEPGRVCGALLCD 3378


>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
            protein K08E5.3b protein.
          Length = 3183

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +3

Query: 135  CSQVCHLLQLCTGATTCSCTHPYTDGTCCPYTALCSAVLPD 257
            CS V H +    G T C C   Y DG       +C A+L D
Sbjct: 2755 CSGVAHCIDRAVGYT-CKCPDGYIDGNPDEPGRVCGALLCD 2794


>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
            protein K08E5.3a protein.
          Length = 3767

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +3

Query: 135  CSQVCHLLQLCTGATTCSCTHPYTDGTCCPYTALCSAVLPD 257
            CS V H +    G T C C   Y DG       +C A+L D
Sbjct: 3339 CSGVAHCIDRAVGYT-CKCPDGYIDGNPDEPGRVCGALLCD 3378


>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
            adhesion receptorMUA-3 precursor protein.
          Length = 3767

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +3

Query: 135  CSQVCHLLQLCTGATTCSCTHPYTDGTCCPYTALCSAVLPD 257
            CS V H +    G T C C   Y DG       +C A+L D
Sbjct: 3339 CSGVAHCIDRAVGYT-CKCPDGYIDGNPDEPGRVCGALLCD 3378


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,150,240
Number of Sequences: 27780
Number of extensions: 353605
Number of successful extensions: 1306
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1301
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)