Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_L12
         (1662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    23   5.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    23   8.1  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 23.0 bits (47), Expect(2) = 5.6
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 84  PPPPPPR 64
           PPPPPPR
Sbjct: 338 PPPPPPR 344



 Score = 22.6 bits (46), Expect(2) = 5.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 90  KXPPPPPP 67
           K PPPPPP
Sbjct: 309 KRPPPPPP 316


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
          Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 22.6 bits (46), Expect(2) = 8.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 86 PPPPPPRG 63
          PPPPPP G
Sbjct: 10 PPPPPPPG 17



 Score = 22.2 bits (45), Expect(2) = 8.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 98 GXXXPPPPPP 69
          G   PPPPPP
Sbjct: 7  GNPPPPPPPP 16


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,802,955
Number of Sequences: 5004
Number of extensions: 12327
Number of successful extensions: 94
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 945496998
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)