Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_L12
         (1662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1404 + 33302080-33303341,33303435-33305307                       34   0.38 
09_02_0327 - 7284829-7284889,7284946-7286126                           25   9.2  

>04_04_1404 + 33302080-33303341,33303435-33305307
          Length = 1044

 Score = 33.9 bits (74), Expect = 0.38
 Identities = 21/68 (30%), Positives = 27/68 (39%)
 Frame = -2

Query: 260 EKRXXRXEN*XGXEKRREKEXXGXGXRKXKGGGQEXGXKXEGAPXAXQGXXXXXGXXXPP 81
           E+R  +  +  G  +R E+   G G    +  G   G      P   QG     G   PP
Sbjct: 306 EERAPKGHDGAGERRRGEQSAPGGG----RASGPRVGGSGSSRPADAQGKRKLGGT--PP 359

Query: 80  PPPPRGXG 57
           P PPRG G
Sbjct: 360 PSPPRGGG 367


>09_02_0327 - 7284829-7284889,7284946-7286126
          Length = 413

 Score = 25.4 bits (53), Expect(2) = 9.2
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 86 PPPPPPRG 63
          PPPPPPRG
Sbjct: 62 PPPPPPRG 69



 Score = 22.2 bits (45), Expect(2) = 9.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 98 GXXXPPPPPP 69
          G   PPPPPP
Sbjct: 50 GAHPPPPPPP 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,032,651
Number of Sequences: 37544
Number of extensions: 254092
Number of successful extensions: 5608
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4913
length of database: 14,793,348
effective HSP length: 86
effective length of database: 11,564,564
effective search space used: 5400651388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)