Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_L12
         (1662 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U34051-1|AAC50278.1|  367|Homo sapiens cyclin-dependent kinase 5...    26   9.1  
DQ307839-1|ABB96255.1|  367|Homo sapiens cyclin-dependent kinase...    26   9.1  
BC041771-1|AAH41771.1|  367|Homo sapiens cyclin-dependent kinase...    26   9.1  
AC097468-1|AAX88916.1|  367|Homo sapiens unknown protein.              26   9.1  

>U34051-1|AAC50278.1|  367|Homo sapiens cyclin-dependent kinase 5
           activator isoform p39i protein.
          Length = 367

 Score = 26.2 bits (55), Expect(2) = 9.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -1

Query: 93  GKXPPPPPPRXXXXXXXXGG 34
           GK PPPPPP         GG
Sbjct: 153 GKPPPPPPPAPQVAPPVPGG 172



 Score = 23.8 bits (49), Expect(2) = 9.1
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1

Query: 102 GXXGKXPPPPPP 67
           G  G  PPPPPP
Sbjct: 149 GSGGGKPPPPPP 160


>DQ307839-1|ABB96255.1|  367|Homo sapiens cyclin-dependent kinase 5,
           regulatory subunit 2 (p39) protein.
          Length = 367

 Score = 26.2 bits (55), Expect(2) = 9.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -1

Query: 93  GKXPPPPPPRXXXXXXXXGG 34
           GK PPPPPP         GG
Sbjct: 153 GKPPPPPPPAPQVAPPVPGG 172



 Score = 23.8 bits (49), Expect(2) = 9.1
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1

Query: 102 GXXGKXPPPPPP 67
           G  G  PPPPPP
Sbjct: 149 GSGGGKPPPPPP 160


>BC041771-1|AAH41771.1|  367|Homo sapiens cyclin-dependent kinase 5,
           regulatory subunit 2 (p39) protein.
          Length = 367

 Score = 26.2 bits (55), Expect(2) = 9.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -1

Query: 93  GKXPPPPPPRXXXXXXXXGG 34
           GK PPPPPP         GG
Sbjct: 153 GKPPPPPPPAPQVAPPVPGG 172



 Score = 23.8 bits (49), Expect(2) = 9.1
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1

Query: 102 GXXGKXPPPPPP 67
           G  G  PPPPPP
Sbjct: 149 GSGGGKPPPPPP 160


>AC097468-1|AAX88916.1|  367|Homo sapiens unknown protein.
          Length = 367

 Score = 26.2 bits (55), Expect(2) = 9.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -1

Query: 93  GKXPPPPPPRXXXXXXXXGG 34
           GK PPPPPP         GG
Sbjct: 153 GKPPPPPPPAPQVAPPVPGG 172



 Score = 23.8 bits (49), Expect(2) = 9.1
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1

Query: 102 GXXGKXPPPPPP 67
           G  G  PPPPPP
Sbjct: 149 GSGGGKPPPPPP 160


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,471,395
Number of Sequences: 237096
Number of extensions: 1356819
Number of successful extensions: 12546
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10165
length of database: 76,859,062
effective HSP length: 94
effective length of database: 54,572,038
effective search space used: 25048565442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)