Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_L12
(1662 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81592-1|CAB04725.1| 695|Caenorhabditis elegans Hypothetical pr... 25 4.7
U58753-8|AAC24439.1| 633|Caenorhabditis elegans Hypothetical pr... 25 4.8
U58753-7|AAC24433.1| 581|Caenorhabditis elegans Hypothetical pr... 25 4.8
U97002-4|AAB52267.1| 630|Caenorhabditis elegans Hypothetical pr... 29 7.3
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 24 8.1
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 24 8.1
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 24 8.1
AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like ... 29 9.6
>Z81592-1|CAB04725.1| 695|Caenorhabditis elegans Hypothetical
protein T16G1.1 protein.
Length = 695
Score = 25.0 bits (52), Expect(2) = 4.7
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -2
Query: 86 PPPPPPRGXG 57
PPPPPPR G
Sbjct: 536 PPPPPPRSSG 545
Score = 23.4 bits (48), Expect(2) = 4.7
Identities = 10/35 (28%), Positives = 12/35 (34%)
Frame = -2
Query: 173 KGGGQEXGXKXEGAPXAXQGXXXXXGXXXPPPPPP 69
+ G G P + G PPPPPP
Sbjct: 506 RNNGNNNGNGRPMKPPSSSGSGSNRRSGPPPPPPP 540
>U58753-8|AAC24439.1| 633|Caenorhabditis elegans Hypothetical
protein W03B1.9 protein.
Length = 633
Score = 25.4 bits (53), Expect(2) = 4.8
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -1
Query: 102 GXXGKXPPPPPP 67
G G+ PPPPPP
Sbjct: 439 GLVGRVPPPPPP 450
Score = 23.0 bits (47), Expect(2) = 4.8
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1
Query: 84 PPPPPPR 64
PPPPPPR
Sbjct: 448 PPPPPPR 454
>U58753-7|AAC24433.1| 581|Caenorhabditis elegans Hypothetical
protein W03B1.5 protein.
Length = 581
Score = 25.4 bits (53), Expect(2) = 4.8
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -1
Query: 102 GXXGKXPPPPPP 67
G G+ PPPPPP
Sbjct: 387 GLVGRVPPPPPP 398
Score = 23.0 bits (47), Expect(2) = 4.8
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1
Query: 84 PPPPPPR 64
PPPPPPR
Sbjct: 396 PPPPPPR 402
>U97002-4|AAB52267.1| 630|Caenorhabditis elegans Hypothetical
protein K09H11.4 protein.
Length = 630
Score = 29.5 bits (63), Expect = 7.3
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Frame = -2
Query: 221 EKRREKEXXGXGXRKXKGGGQEXGXKXEGAPXAXQGXXXXXGXXXPPPP--PP 69
E R E+E G + +GG +E + E P +G PP P PP
Sbjct: 344 EGRDEQERRSHGSEERRGGSEEQPHREERGPQKPEGQQQQQQAPSPPKPQIPP 396
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 24.2 bits (50), Expect(2) = 8.1
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = -2
Query: 86 PPPPPPRG 63
PPPPPP+G
Sbjct: 259 PPPPPPKG 266
Score = 23.4 bits (48), Expect(2) = 8.1
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = -2
Query: 167 GGQEXGX-KXEGAPXAXQGXXXXXGXXXPPPPPP 69
GGQ+ G + + +G PPPPPP
Sbjct: 230 GGQQQGFGQQQQTQNGFRGKRQAPPAGSPPPPPP 263
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 24.2 bits (50), Expect(2) = 8.1
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = -2
Query: 86 PPPPPPRG 63
PPPPPP+G
Sbjct: 244 PPPPPPKG 251
Score = 23.4 bits (48), Expect(2) = 8.1
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = -2
Query: 167 GGQEXGX-KXEGAPXAXQGXXXXXGXXXPPPPPP 69
GGQ+ G + + +G PPPPPP
Sbjct: 215 GGQQQGFGQQQQTQNGFRGKRQAPPAGSPPPPPP 248
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 24.2 bits (50), Expect(2) = 8.1
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = -2
Query: 86 PPPPPPRG 63
PPPPPP+G
Sbjct: 238 PPPPPPKG 245
Score = 23.4 bits (48), Expect(2) = 8.1
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = -2
Query: 167 GGQEXGX-KXEGAPXAXQGXXXXXGXXXPPPPPP 69
GGQ+ G + + +G PPPPPP
Sbjct: 209 GGQQQGFGQQQQTQNGFRGKRQAPPAGSPPPPPP 242
>AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like
(grd related) protein29 protein.
Length = 172
Score = 29.1 bits (62), Expect = 9.6
Identities = 15/43 (34%), Positives = 16/43 (37%)
Frame = -2
Query: 194 GXGXRKXKGGGQEXGXKXEGAPXAXQGXXXXXGXXXPPPPPPR 66
G G GGG G G G G PPPPPP+
Sbjct: 32 GGGGGCGGGGGCGGGCGYGGGGGCGYGGGYGCGIPPPPPPPPQ 74
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,505,577
Number of Sequences: 27780
Number of extensions: 158898
Number of successful extensions: 1787
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1467
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4857324264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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