Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_L11
(900 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 32 0.097
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 30 0.39
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 29 1.2
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 1.6
SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces... 28 2.1
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha... 27 3.6
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 26 6.3
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce... 26 6.3
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce... 26 6.3
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch... 26 8.4
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 26 8.4
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 32.3 bits (70), Expect = 0.097
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = +2
Query: 482 WVCHGRKCLTSHACTCPLMDAVCLECERGVW--EHGGRV--FRCCF 607
++C G CL T P VC +C R + E G+V RCCF
Sbjct: 17 FICPGCNCLPDWPVTLPCGGTVCRKCFRNAYSSESSGKVSPSRCCF 62
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 30.3 bits (65), Expect = 0.39
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +2
Query: 560 ERGVWEHGGRVFRCCFCQG-FLCEDDQFEHQASCQVLES-ETYKCQSCNRIGQYSCLR 727
E VWE F C FC F C D + H C+ + + Y+ + N + Y+C++
Sbjct: 47 EEEVWEDEVHEFCCLFCDSTFTCLKDLWSH---CKEAHNFDFYQVKQQNNLDFYACIK 101
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +2
Query: 638 FEHQASCQVLESETYKCQSCNRIGQYSCLRCKTCF 742
FEH + L S + C +C +I + C CF
Sbjct: 46 FEHNNNSPTLRSSSVACNTCLKIIRNDSFHCTKCF 80
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 28.3 bits (60), Expect = 1.6
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +1
Query: 157 QEHAKEKDRST*KSRETEVAPERDSGRSRTCRFSSTSL*RCYGVRQMSEKTEDTCILLLL 336
Q H E DR+ SR +VAP D R SST L +S+ + + + L
Sbjct: 98 QNHLTENDRNFGTSRLDDVAPNADGVRRLRTSGSSTGLSNAPPSANVSKASSNLSLASLA 157
Query: 337 SSCTK--TPNMC 366
+ + TP +C
Sbjct: 158 KTQPERATPEVC 169
>SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/62 (24%), Positives = 32/62 (51%)
Frame = +2
Query: 167 PKKKTGQRKKAEKQKLRQKEIRAAREHVDLAQHPCNVAMECDKCQKKQKTRAFCYFCQAV 346
P + G K ++L ++ + AA+E + L + A + + + ++K +AF Y C+ +
Sbjct: 266 PPETAGIGKPENYEELDKEYVDAAKEFIRLTREWIYAAGKPQEAEIEEKRKAFKYECKKL 325
Query: 347 QR 352
R
Sbjct: 326 WR 327
>SPBC29A3.05 |||chromatin remodeling complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 27.1 bits (57), Expect = 3.6
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +2
Query: 686 CQSCNRIGQYSCLRCKTCFCEE 751
C C G+Y+C C T +C +
Sbjct: 102 CNVCGYWGKYACQNCGTSYCSK 123
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +3
Query: 426 VFTTREWEWWVLYVTSVRHGCVMVENVSRPMRAPVLSWMPCA 551
V T + +W +L+V C+++ N +RP + PV ++ CA
Sbjct: 591 VSTQMDDKWKILFVPLFTL-CLLIVNQARPSQWPVSIFISCA 631
>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 26.2 bits (55), Expect = 6.3
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +3
Query: 501 NVSRPMRAPVLSWMPCAWSAREVYGSMVVGFSGAVSAKDFCAKMTS-LSIRPHVKFWNRK 677
N+S P AP + C R + + +S +DFC ++T+ L H+ + +
Sbjct: 445 NISIPESAPTTAGSTCKVKVRLGDETFALRVPSDISFEDFCERLTNKLGECEHLSY---R 501
Query: 678 PTSVNRVTVL 707
T+ N+V L
Sbjct: 502 DTNANKVLPL 511
>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 366 PTVGKSNAC*SLEIVLLDIQVFTTREWEWWVLYVTSVRHGCVM 494
P+V S A L V ++ F + W+W++L V CV+
Sbjct: 164 PSVNSSAASMILGAVTVNRPDFVIQRWQWFLLAVAIQCFNCVL 206
>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 25.8 bits (54), Expect = 8.4
Identities = 10/42 (23%), Positives = 21/42 (50%)
Frame = +2
Query: 302 KKQKTRAFCYFCQAVQRLPTCAHCGKVKCMLKSGDCVIRHPG 427
KK ++R C C+++++ H +C+ C+ + PG
Sbjct: 13 KKPRSRYGCLICRSMRKKCDEVHPQCGRCLKAGKQCIWKQPG 54
>SPCC1183.07 |||U3 snoRNP-associated protein
Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1690
Score = 25.8 bits (54), Expect = 8.4
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Frame = +2
Query: 209 KLRQKEIRAAREHVDLAQHPCNVAMECDKCQKKQKT--RAFCYFCQAVQRLPTCAHCGKV 382
++ + IR AREH + Q + CD +K + R + + ++R G V
Sbjct: 610 EMSEAYIRDAREHFKVGQTLSVTIVSCDPENRKMRVGCREQSWDAKRLERFEN-IKAGSV 668
Query: 383 K---CMLKSGDCVIRHPGVYNTGMGMVGAICD 469
+ K+ D VI G TG+ +G +CD
Sbjct: 669 LSGIVLQKTEDSVIVDLGDKVTGVITLGQLCD 700
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,600,598
Number of Sequences: 5004
Number of extensions: 77785
Number of successful extensions: 240
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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